Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D22
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   290   1e-79
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   290   2e-79
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   7.9  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  290 bits (712), Expect = 1e-79
 Identities = 135/225 (60%), Positives = 164/225 (72%)
 Frame = +2

Query: 119 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSGQPYCVSKEAGHQTSAESW 298
           S+YS K  +V      LPFVFKAPIRPDLV  VH +++KN  QPY VS++AGHQTSAESW
Sbjct: 9   SIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67

Query: 299 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 478
           GTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH               
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSA 127

Query: 479 XXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ 658
                      ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S+
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSR 187

Query: 659 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVXLLNV 793
           +LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGV ++NV
Sbjct: 188 KLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNV 232



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +1

Query: 769 PGCGXPECNKLNLLKLAPGXHLGRFVI 849
           PG       +LNLL+LAPG HLGRFVI
Sbjct: 225 PGVEIVNVRRLNLLQLAPGGHLGRFVI 251


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  290 bits (711), Expect = 2e-79
 Identities = 134/225 (59%), Positives = 164/225 (72%)
 Frame = +2

Query: 119 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSGQPYCVSKEAGHQTSAESW 298
           S+Y+ K  +V      LPFVFKAPIRPDLV  VH +++KN  QPY VS++AGHQTSAESW
Sbjct: 9   SIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESW 67

Query: 299 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 478
           GTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH               
Sbjct: 68  GTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASA 127

Query: 479 XXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ 658
                      ARGH IE+IPE+PLVV D VQ   KTK+AV  L+ +KA+ D++KV  S+
Sbjct: 128 VAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSR 187

Query: 659 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVXLLNV 793
           +LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGV ++NV
Sbjct: 188 KLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNV 232



 Score = 37.9 bits (84), Expect = 0.002
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +1

Query: 769 PGCGXPECNKLNLLKLAPGXHLGRFVI 849
           PG       +LNLL+LAPG HLGRFVI
Sbjct: 225 PGVEIVNVRRLNLLQLAPGGHLGRFVI 251


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = -3

Query: 112 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 35
           K+G LP+ SF Y +  +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,318,519
Number of Sequences: 5004
Number of extensions: 64085
Number of successful extensions: 158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)