Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_D22
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 245 3e-65
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 245 4e-65
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.13
08_02_1278 - 25838146-25839411 32 0.68
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 2.7
03_05_0366 - 23505755-23506441 29 3.6
05_04_0292 + 19893895-19894983 29 4.8
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163... 29 4.8
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 29 6.3
06_01_0017 + 189346-189561,189614-189905,190024-190043 29 6.3
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.3
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 28 8.3
04_04_1393 - 33204699-33204806,33204927-33205164,33205581-332058... 28 8.3
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 245 bits (600), Expect = 3e-65
Identities = 118/218 (54%), Positives = 146/218 (66%), Gaps = 1/218 (0%)
Frame = +2
Query: 143 TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSGQPYCVSKEAGHQTSAESWGTGRAVAR 322
T ++ L VF+AP+RPD+V VH +S N QPY VS+ AGHQTSAESWGTGRAV+R
Sbjct: 20 TDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSR 79
Query: 323 IPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXX 502
IPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 80 IPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPS 139
Query: 503 XXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGK 682
ARGH IE +PELPLV++D + I KT QA+ L+++ A++D K S +R GKGK
Sbjct: 140 LVLARGHRIETVPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGK 199
Query: 683 MRNRRRIQRKGPLIIFNKD-QGLTRAFRNIPGVXLLNV 793
MRNRR I RKGPLI++ + + +AFRN+PGV + NV
Sbjct: 200 MRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANV 237
Score = 37.9 bits (84), Expect = 0.010
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +1
Query: 769 PGCGXPECNKLNLLKLAPGXHLGRFVI 849
PG +LNLL LAPG HLGRFVI
Sbjct: 230 PGVDVANVERLNLLDLAPGGHLGRFVI 256
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 245 bits (599), Expect = 4e-65
Identities = 119/222 (53%), Positives = 145/222 (65%), Gaps = 1/222 (0%)
Frame = +2
Query: 131 EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSGQPYCVSKEAGHQTSAESWGTGR 310
E A +P V +APIRPD+V H +S N QPY VS+ AGHQTSAESWGTGR
Sbjct: 15 EGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGR 74
Query: 311 AVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXX 490
AV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 75 AVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAAT 134
Query: 491 XXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRA 670
ARGH IE +PE PLVV+D ++ I KT Q++ L+++ A++D K S +RA
Sbjct: 135 AVPSLVLARGHRIEGVPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRA 194
Query: 671 GKGKMRNRRRIQRKGPLIIFNKD-QGLTRAFRNIPGVXLLNV 793
GKGKMRNRR I RKGPLI++ + + +AFRN+PGV + NV
Sbjct: 195 GKGKMRNRRYINRKGPLIVYGTEGSKVVKAFRNLPGVDVANV 236
Score = 37.9 bits (84), Expect = 0.010
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +1
Query: 769 PGCGXPECNKLNLLKLAPGXHLGRFVI 849
PG +LNLL LAPG HLGRFVI
Sbjct: 229 PGVDVANVERLNLLDLAPGGHLGRFVI 255
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 34.3 bits (75), Expect = 0.13
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +2
Query: 227 MSKNSGQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 397
+++ + ++E G A+SW TGRA A + R R GG R A N G R
Sbjct: 18 LARAAASSVAANREGGG--GAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>08_02_1278 - 25838146-25839411
Length = 421
Score = 31.9 bits (69), Expect = 0.68
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = -3
Query: 616 APQEDDSLFGLVDLLDFVGYNQGKLGNLFNNVSSSL 509
A +E LF L+D+LD V +G+L LF+ S++L
Sbjct: 89 AAREPQRLFRLLDMLDAVARERGRLDELFSGESATL 124
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 392 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 285
HH + H + YE+ + H + RQ QY QH
Sbjct: 150 HHQQYQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQH 185
>03_05_0366 - 23505755-23506441
Length = 228
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 248 PYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGA 370
P C S E + +AES TG A R R+ G T+ + + A
Sbjct: 134 PRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPTNDNDEEA 174
>05_04_0292 + 19893895-19894983
Length = 362
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -2
Query: 203 GPDGWAP*TRTGGAWLHPAPSHSSLNTPTXKGRATDRLISL-L*RSYTSEIYTNSGDKDH 27
G D WAP GG LHP H++ + + R +L + + + KDH
Sbjct: 211 GADSWAPLRVAGGIPLHPGFVHATRSKSELEPRPDSVFFTLDMLDKFLAMALPEGATKDH 270
Query: 26 P 24
P
Sbjct: 271 P 271
>01_07_0167 -
41613834-41613842,41614060-41615056,41615456-41616336,
41616437-41616508,41616590-41616649,41616736-41616885,
41616974-41617021,41617107-41617181,41617266-41617411,
41617514-41617594,41617703-41617810,41618046-41618057,
41618137-41618148,41618499-41618546,41619021-41619105
Length = 927
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 682 NAQPSSYPA*GAP--HNLQQGSGSDSRLPQHPGC 777
N P G+P +NLQ+G GS S++P H GC
Sbjct: 85 NMAPGRLAYAGSPNIYNLQEGEGSSSKMP-HLGC 117
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 28.7 bits (61), Expect = 6.3
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = +2
Query: 215 VHVSMSKNSGQPYCVSKEAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR 388
V VS K SG + E G ++ G++V + + R+R H G G+ G++ +
Sbjct: 59 VTVSPEKVSGAKS--TDEGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSK 116
Query: 389 ---GGRMFAPTKP-WR 424
GG+M P P WR
Sbjct: 117 DGTGGKMLRPGFPKWR 132
>06_01_0017 + 189346-189561,189614-189905,190024-190043
Length = 175
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 529 NNVSSSLNERWDAGSSNGCRQGR--SPLSEVDATVPTP 422
N+ +S L+ +WDAGS + SPLS V A P
Sbjct: 103 NDSTSKLSFKWDAGSCSSASSSAMYSPLSAVSAPAKAP 140
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 272 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 376
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>07_01_0024 +
159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Frame = +1
Query: 712 GAP--HNLQQGSGSDSRLPQHPGC 777
G+P +NLQ+G GS S++P H GC
Sbjct: 55 GSPNIYNLQEGEGSSSKMP-HLGC 77
>04_04_1393 -
33204699-33204806,33204927-33205164,33205581-33205825,
33206229-33206339,33206645-33206743,33207684-33207731,
33207882-33207999,33208085-33208115,33208700-33208806,
33209644-33209725,33210010-33210104,33210579-33210664,
33211074-33211195,33211613-33211824,33212362-33212510,
33212755-33212982
Length = 692
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 823 PEPVSGGSACYIQEXHTRDVAEGASQTLIL 734
P+ GG AC+I + H EG Q L+L
Sbjct: 99 PQDQCGGKACFIVDNHPLFDGEGTPQVLLL 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,771,944
Number of Sequences: 37544
Number of extensions: 552359
Number of successful extensions: 1908
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1898
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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