Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_D22
(861 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 280 1e-75
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 33 0.23
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.39
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 31 0.91
SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_13496| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_56294| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 4.9
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 4.9
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 8.5
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 8.5
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 28 8.5
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 8.5
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 280 bits (686), Expect = 1e-75
Identities = 133/225 (59%), Positives = 160/225 (71%)
Frame = +2
Query: 119 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSGQPYCVSKEAGHQTSAESW 298
+V++E E+ LP VFKAPIRPDLVN VH +++KN QPY V+K AGHQTSAESW
Sbjct: 7 TVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESW 64
Query: 299 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 478
GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 65 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSA 124
Query: 479 XXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ 658
ARGH IEKI E+PLV++D ++ + KT AV L+ + A+ D+ K S+
Sbjct: 125 LAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDSK 184
Query: 659 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVXLLNV 793
++RAGKGKMRNRR + RKGPLII+N DQGL +AFRN+PGV L +V
Sbjct: 185 KIRAGKGKMRNRRTVMRKGPLIIYNNDQGLRQAFRNLPGVELQHV 229
Score = 33.1 bits (72), Expect = 0.30
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 769 PGCGXPECNKLNLLKLAPGXHLGR 840
PG ++LNLLKL PG HLGR
Sbjct: 222 PGVELQHVDRLNLLKLCPGGHLGR 245
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.5 bits (73), Expect = 0.23
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 392 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 279
HH CY H Y Y+ H H + R H YP +H++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 32.7 bits (71), Expect = 0.39
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 377 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQ 270
Y +HP T+ YHH H + ++ Q+P + H + Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447
Score = 31.9 bits (69), Expect = 0.69
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 377 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 285
Y +HP T+ YH H R H Q+P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.5 bits (68), Expect = 0.91
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 392 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 309
HH RH R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351
>SB_31207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 30.3 bits (65), Expect = 2.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -3
Query: 700 TTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYNQ 551
+T + HF KT R +H+K P E GL+D+LD G+ Q
Sbjct: 18 STVLHHFIDKHAKTPRFLHMKP-----NGPGEGGGSSGLLDMLDAAGFEQ 62
>SB_13496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 559
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 808 GGSACYIQEXHTRDVAEGASQTLILVEDYEGPLTLDTTTVAHFTLT 671
G S C+I E + + E T I + G +DT V+H +T
Sbjct: 13 GSSGCFITEDQRQQLGEDGVMTSIQLGTINGKEIVDTVAVSHVVVT 58
>SB_56294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 808 GGSACYIQEXHTRDVAEGASQTLILVEDYEGPLTLDTTTVAHFTLT 671
G S C+I E + + E +T I + G +DT T +H +T
Sbjct: 326 GSSGCFITEGLRQQLGEDGVRTSIQLGTINGKEIVDTVTASHVVVT 371
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 3.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 401 TYVHHDTCYRRHPDRTYEYHHHGHA 327
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 4.9
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -2
Query: 404 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 300
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 281 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 397
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 299 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 427
G GR + R P GGG R G +G M GG P W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 392 HHDTCYRRHPDRTYEYHHH 336
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 200 DLVNDVHVSMSKNSGQPYCVSKEAGHQTSAESWGTGRAVARI 325
D+ NDV ++++ + PY + H T E TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 398 YVHHDTCYRRHPDRTYEYHHHGH 330
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,535,349
Number of Sequences: 59808
Number of extensions: 554940
Number of successful extensions: 1638
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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