Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_D22
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 261 5e-70
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 30 2.4
U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 29 5.6
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p... 29 5.6
U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule abnor... 29 5.6
U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule abnor... 29 5.6
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 29 5.6
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical... 29 5.6
AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein. 29 5.6
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 261 bits (639), Expect = 5e-70
Identities = 125/225 (55%), Positives = 156/225 (69%)
Frame = +2
Query: 119 SVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSGQPYCVSKEAGHQTSAESW 298
+VY EK E Q + LP VF+ PIRPDLV+ + + +N Q + V+ +AG Q SAESW
Sbjct: 8 TVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAESW 66
Query: 299 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXX 478
GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH
Sbjct: 67 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSA 126
Query: 479 XXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ 658
QARGH+I+++ E+PLVV+DKV+ KTK+AV+FLRR W+DI KVY S+
Sbjct: 127 IAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKVYNSK 186
Query: 659 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVXLLNV 793
R RAGKGK+RNR+ Q+ GP++I+ +D RAFRNIPGV ++NV
Sbjct: 187 RNRAGKGKLRNRQHKQKLGPVVIYGQDAECARAFRNIPGVDVMNV 231
Score = 37.1 bits (82), Expect = 0.016
Identities = 16/27 (59%), Positives = 18/27 (66%)
Frame = +1
Query: 769 PGCGXPECNKLNLLKLAPGXHLGRFVI 849
PG +LNLLKLAPG HLGR +I
Sbjct: 224 PGVDVMNVERLNLLKLAPGGHLGRLII 250
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Frame = +2
Query: 257 VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFAPTKP 418
V K H+ SW T + R GGG R SG G RGGR KP
Sbjct: 144 VQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNGAPKP 200
>U00031-9|AAK18871.1| 470|Caenorhabditis elegans Hypothetical
protein B0361.8 protein.
Length = 470
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 706 LDTTTVAHFTLTSTKTLRLVHLKDIRPCLEAPQEDDSLFGLVDLLDFVGYN 554
L+ +VA L TKT+RL+ + IRP + + L + + L+ +GYN
Sbjct: 265 LNIESVAESLLEDTKTVRLLSVGQIRPEKNHKLQLEVLHDVKEPLEKMGYN 315
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -3
Query: 562 GYNQGKLGNL-FNNVSSSLNERWDAGSSNGCRQGRSPLSEVDATVPTP 422
GY G + N+ N VS+ + + ++A +S G G S +E+D P P
Sbjct: 614 GYT-GCIKNIRMNGVSTKIGQEFEASNSTGIELGCSLSNELDICEPNP 660
>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 557 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 733
V V E+ KTK VI + LKA ++ +K K + R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 734 KD 739
KD
Sbjct: 473 KD 474
>U52003-5|AAG00057.1| 730|Caenorhabditis elegans P granule
abnormality protein 1,isoform a protein.
Length = 730
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 134 KSETVQGAAKPLPFVFKAPIRPDLVNDV-HVSMSKNSGQPYCVSKEAGHQTSAESWGTGR 310
++ET G+ P AP V+ ++K GQ S G +G G
Sbjct: 625 RAETAWGSGDATPMPLPAPTNQYKVSGFGEAKVAKGFGQFAPTSSAYGGGGGRGGYGGGD 684
Query: 311 AVARIPRVRGGGTHRSGQGAFGNMCRGGR 397
R G G R G+G +G RGGR
Sbjct: 685 RGGR----GGYGGDRGGRGGYGGGDRGGR 709
>U52003-4|ABB51171.1| 771|Caenorhabditis elegans P granule
abnormality protein 1,isoform b protein.
Length = 771
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 134 KSETVQGAAKPLPFVFKAPIRPDLVNDV-HVSMSKNSGQPYCVSKEAGHQTSAESWGTGR 310
++ET G+ P AP V+ ++K GQ S G +G G
Sbjct: 666 RAETAWGSGDATPMPLPAPTNQYKVSGFGEAKVAKGFGQFAPTSSAYGGGGGRGGYGGGD 725
Query: 311 AVARIPRVRGGGTHRSGQGAFGNMCRGGR 397
R G G R G+G +G RGGR
Sbjct: 726 RGGR----GGYGGDRGGRGGYGGGDRGGR 750
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 392 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 309
HHD +++H + ++ HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145
>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
protein H38K22.1 protein.
Length = 1570
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 557 VADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQ-RLRAGKGKMRNRRRIQRKGPLIIFN 733
V V E+ KTK VI + LKA ++ +K K + R++A K M + P F+
Sbjct: 413 VVTGVTEVAKTKLEVISDKMLKACAERMKDKKPKVRIQAIKRLMDLYNHVMTSSPQPFFS 472
Query: 734 KD 739
KD
Sbjct: 473 KD 474
>AF077868-1|AAC36100.1| 730|Caenorhabditis elegans PGL-1 protein.
Length = 730
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Frame = +2
Query: 134 KSETVQGAAKPLPFVFKAPIRPDLVNDV-HVSMSKNSGQPYCVSKEAGHQTSAESWGTGR 310
++ET G+ P AP V+ ++K GQ S G +G G
Sbjct: 625 RAETAWGSGDATPMPLPAPTNQYKVSGFGEAKVAKGFGQFAPTSSAYGGGGGRGGYGGGD 684
Query: 311 AVARIPRVRGGGTHRSGQGAFGNMCRGGR 397
R G G R G+G +G RGGR
Sbjct: 685 RGGR----GGYGGDRGGRGGYGGGDRGGR 709
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,961,583
Number of Sequences: 27780
Number of extensions: 398181
Number of successful extensions: 1145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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