Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D21
         (866 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)                   103   2e-22
SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)                   32   0.70 
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_52798| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)                    29   4.9  
SB_14131| Best HMM Match : TPR_2 (HMM E-Value=1.2)                     29   4.9  

>SB_55186| Best HMM Match : TPR_2 (HMM E-Value=0.91)
          Length = 571

 Score =  103 bits (247), Expect = 2e-22
 Identities = 71/214 (33%), Positives = 101/214 (47%), Gaps = 1/214 (0%)
 Frame = +1

Query: 7   VKKMSANKENNLVQAYLELNKFCQSSDYERALKAAGKILQIAPNEQKAFHCKVVCFLQLH 186
           + KM+AN   +L Q + EL++  +  +Y +A K A KILQ +P ++ AFHCKVVC +Q  
Sbjct: 64  LSKMAANTSPSLPQLFSELDRLGKEGNYSKAQKIANKILQESPADEDAFHCKVVCLIQQS 123

Query: 187 NFKEALATLTNAKNSALAADLLFEKAYTQYRLNSPKEALQTVDSAPELTPALKELRAQIL 366
            F EAL  + +     +   L FEKAY  YRLN  +EA+QT+ + P+  P  KEL AQ  
Sbjct: 124 YFHEALDVINSGSKKGIKV-LPFEKAYALYRLNMTQEAIQTLQALPDPGPKEKELLAQ-- 180

Query: 367 YRLEQYQDCYNLYRDLLKNTTDEYEDERKXXXXXXXXXXXXXXPTS-ELPQFDENTYELA 543
                                D+Y DER+                  E     E+TYEL+
Sbjct: 181 --------------------ADDYGDERETNMSAVIASSNQWGSVKLENVGLREHTYELS 220

Query: 544 YNSGSTLAMRGKYNEALSVLKRAEQACSXSVIXD 645
           YN+            A+  L++AE  C  S+  D
Sbjct: 221 YNAACLELANNNLEGAIKKLQQAEVLCRKSLEED 254


>SB_46152| Best HMM Match : DUF241 (HMM E-Value=0.62)
          Length = 1110

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
 Frame = +1

Query: 223 KNSALAADLLFEKAYTQYRLNSPKEALQTVDSAP----ELTPALKELRAQILYRLEQYQD 390
           KN  L    LF +  T  R N  +     +DS      E+  AL++L + +    E  Q+
Sbjct: 692 KNDNLQTGNLFGETLTNLRENLSQTRQMVIDSRTQFKHEIVKALEKLSSTLKKASELTQE 751

Query: 391 CYNL-YRDLLKNTTDEYEDERK 453
             +  Y+ +L+  TD+Y+ E+K
Sbjct: 752 RTSKEYKKILREVTDKYDKEKK 773


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 26/84 (30%), Positives = 37/84 (44%)
 Frame = +1

Query: 190  FKEALATLTNAKNSALAADLLFEKAYTQYRLNSPKEALQTVDSAPELTPALKELRAQILY 369
            +KE L  LT  +    AA     KA T Y  N+  E  +  D   +    LK++RAQ L 
Sbjct: 1167 YKETLHELTKTQEELRAAS---SKAATGYE-NTISEIKKEKDMLYDEVKHLKDIRAQQLE 1222

Query: 370  RLEQYQDCYNLYRDLLKNTTDEYE 441
             +E+ +      RD+  N   E E
Sbjct: 1223 EIEELKRQIEHMRDVQNNYQKELE 1246


>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 582

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
 Frame = +1

Query: 49  AYLELNKFCQSSDYERALKAAGKILQIAPNEQKA-----FHCKVVCFLQLHNFKEALATL 213
           A L+ NK+ +   YE+A+K   + +++ P E K      +  +   + Q++ F+  +   
Sbjct: 144 AKLKGNKYFKGCKYEQAIKCYTEAIELCPPENKQDLSTFYQNRAAAYEQMNQFENVVEEA 203

Query: 214 TNA-KNSALAADLLFEKAYTQYRLNSPKEALQ 306
           T A + ++     L  +A    +L   +E LQ
Sbjct: 204 TKALELNSKYTKALMRRARALEKLERKQECLQ 235


>SB_52798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -2

Query: 130 LSAVFSLQLLKLFHSHCSGKIYL 62
           LSAV  LQLL++FH+ C  K YL
Sbjct: 42  LSAVTPLQLLQVFHALCVSKGYL 64


>SB_21989| Best HMM Match : Spectrin (HMM E-Value=0)
          Length = 1805

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +1

Query: 280  LNSPKEALQTVDSAPELTPALKELRAQILYRLEQYQDCYNLYRDLLKNTTDEYEDER 450
            L  P  A   V+   EL  A+K +  +I  R  Q +       DLL N+TD+YE ER
Sbjct: 1187 LKRPSTATSLVELDRELD-AVKRIGKEIDERKSQLE-LITRRGDLLANSTDQYESER 1241


>SB_14131| Best HMM Match : TPR_2 (HMM E-Value=1.2)
          Length = 144

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 523 ENTYELAYNSGSTLAMRGKYNEALSVLKRAEQACSXSVIXD 645
           E+TYEL+YN+            A+  L++AE  C  S+  D
Sbjct: 59  EHTYELSYNAACLELANNNLEGAIKKLQQAEVLCRKSLEED 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.132    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,278,625
Number of Sequences: 59808
Number of extensions: 403717
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)