Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D18
         (889 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   4e-07
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)                     47   2e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.004
SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76)                 30   2.9  
SB_55420| Best HMM Match : fn3 (HMM E-Value=0)                         28   8.8  
SB_33338| Best HMM Match : Ank (HMM E-Value=2.4e-22)                   28   8.8  

>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 145

 Score = 52.8 bits (121), Expect = 4e-07
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = +2

Query: 113 MPRHLISDAHEWINEIPTVPIYYLAKP 193
           MPRHLISDAHEWINEIPTVPI    +P
Sbjct: 1   MPRHLISDAHEWINEIPTVPIIEFLQP 27


>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
          Length = 167

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = +3

Query: 30  SALNVNVKKFKQARVNGGSNYDSL 101
           +ALNV VKKF QARVNGGSNYDSL
Sbjct: 28  AALNVKVKKFNQARVNGGSNYDSL 51


>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 95

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 20/23 (86%), Positives = 20/23 (86%)
 Frame = +3

Query: 33  ALNVNVKKFKQARVNGGSNYDSL 101
           ALNV VKKF QARVNG SNYDSL
Sbjct: 2   ALNVKVKKFNQARVNGWSNYDSL 24


>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 130

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = -3

Query: 239 GSSFPADSPKPVPLAVVSLDSR 174
           GSSFPAD  KPVPLAVVSLDSR
Sbjct: 109 GSSFPADCAKPVPLAVVSLDSR 130


>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 18/24 (75%), Positives = 19/24 (79%)
 Frame = +3

Query: 27  PSALNVNVKKFKQARVNGGSNYDS 98
           PSALNV VKKF QARVNGG   +S
Sbjct: 31  PSALNVKVKKFNQARVNGGDPLES 54


>SB_50942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 638

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 445 PATSPLCTLGTKHRAPADIIDRAPLPPNRV 356
           P   P    GT HR PA+   R  +P NRV
Sbjct: 510 PTNFPESVPGTHHRVPAEATGRVDVPDNRV 539


>SB_51109| Best HMM Match : ATP-cone (HMM E-Value=0.76)
          Length = 250

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 445 PATSPLCTLGTKHRAPADIIDRAPLPPNRV 356
           P   P    GT HR PA+   R  +P NRV
Sbjct: 216 PTNFPESVPGTHHRVPAEATGRVDVPDNRV 245


>SB_55420| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 789

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 85  LPPFTRACLNFFTLTFRALGKKSHCVT 5
           L PFT+ C+    LT +  G  S CVT
Sbjct: 278 LEPFTQYCVTVAALTIKGAGPWSDCVT 304


>SB_33338| Best HMM Match : Ank (HMM E-Value=2.4e-22)
          Length = 215

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = -3

Query: 506 AWXXSSNRINAGSFKR----ATSVSRHVTTXHAWNETPCARRYYRPRTASAQPS 357
           A+  S NR+   S +R    A+ + R   T    + TP  RRY RP++ +  P+
Sbjct: 25  AYAASKNRLRPSSLQRRSASASDLERMDDTRDNSDSTPRKRRYPRPQSVNFHPN 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,014,496
Number of Sequences: 59808
Number of extensions: 400297
Number of successful extensions: 729
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)