Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D18
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.70 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   2.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   2.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.5  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   8.6  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 460 GRRAFPATSPLCTLGTKHRAPADIIDRAPL 371
           G R +P ++   T GTK R     +DR P+
Sbjct: 322 GSREYPTSNATDTDGTKERTEEVALDRTPV 351


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -3

Query: 542  DXMXPPPSQNSPAWXXSSNRINAGSFKRATSVS---RHVTTXHAWNETPCARRYYRPRTA 372
            D     P Q + +   SSN+++AG  K   +VS    H T+  + + +P + +   PR  
Sbjct: 1783 DESESDPDQLTSSRTESSNQLDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLPRRG 1842

Query: 371  SAQPS 357
             +  S
Sbjct: 1843 RSSRS 1847


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = -3

Query: 542  DXMXPPPSQNSPAWXXSSNRINAGSFKRATSVS---RHVTTXHAWNETPCARRYYRPRTA 372
            D     P Q + +   SSN+++AG  K   +VS    H T+  + + +P + +   PR  
Sbjct: 1779 DESESDPDQLTSSRTESSNQLDAGKLKHIRAVSDFIYHGTSSTSSDISPMSEQKSLPRRG 1838

Query: 371  SAQPS 357
             +  S
Sbjct: 1839 RSSRS 1843


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 317 SSLKNHYFHCFITYSVGRK 373
           SS    +FHC+     GRK
Sbjct: 420 SSFFQQFFHCYCPVRFGRK 438


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 296 VGDRFARSSLKNHYFHCFI 352
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 296 VGDRFARSSLKNHYFHCFI 352
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,939
Number of Sequences: 438
Number of extensions: 4613
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)