Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D16
         (857 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    30   0.37 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.5  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   7.9  

>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +2

Query: 200 FNKIMSTLKLISEVRSGLYSHWRDVFEHVRSTAKIKHYADQNTSSCTPQEREC-SIRKSC 376
           F+K++ST   IS   + L   WRD  +HV    +     +   +S       C       
Sbjct: 384 FSKMLST---ISNEITNLQGDWRDQLDHVEFLQEHLGPLEVELASVKVLYDNCFQAGIEE 440

Query: 377 NNVSVTSMEDLSHEEIVTSYVLAHVAQF 460
           N+ ++ S EDL HE  +T+ ++A+  ++
Sbjct: 441 NDYTMFSYEDLEHEFGITANIIANKIKY 468


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 377 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFTNGNT 502
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
 Frame = -3

Query: 681 IHSLMSWFTVLVPYNSS----SSHWLKNDSCRN----YPLVMTDPLLRS--KFHLRFALA 532
           ++SL+SW  +   +NS     S+ +L+ D C+N    Y ++    L  +   FHL  A  
Sbjct: 53  VNSLLSWCMLSSWFNSKLSKLSAGYLQFD-CQNDGKCYSVIAVHRLSFTLVMFHLFLAFI 111

Query: 531 LISCNSLLRVVFPLVNAM 478
           L  CN+  RV   + N +
Sbjct: 112 LSLCNTRSRVAIKIQNGL 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,344,999
Number of Sequences: 5004
Number of extensions: 65664
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)