Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D16
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0042 - 12731228-12731362,12731984-12732046,12732136-127322...    36   0.031
07_01_0116 - 855122-855352,856733-857059,857095-858481,858636-85...    30   2.7  
12_02_0704 - 22293955-22294255,22294276-22294602,22294794-222948...    28   8.3  
02_02_0082 + 6615408-6615606,6615736-6615866,6615957-6616072,661...    28   8.3  

>07_03_0042 -
           12731228-12731362,12731984-12732046,12732136-12732207,
           12732783-12732855,12732937-12733005,12733375-12733439,
           12733677-12734087,12734186-12734230,12734338-12734413,
           12734555-12734629,12735101-12735207,12736573-12736635
          Length = 417

 Score = 36.3 bits (80), Expect = 0.031
 Identities = 22/76 (28%), Positives = 38/76 (50%)
 Frame = +2

Query: 182 TSFYLVFNKIMSTLKLISEVRSGLYSHWRDVFEHVRSTAKIKHYADQNTSSCTPQERECS 361
           TS Y +FNK+ STL   S V SG ++  RD      +    + + D+ +SS + ++R  +
Sbjct: 164 TSGYTLFNKLRSTLSSASPVLSGAFAKLRDTRVSTYAKQGYEIFKDELSSSSSRKKRNHA 223

Query: 362 IRKSCNNVSVTSMEDL 409
              S   V  ++  +L
Sbjct: 224 RHASAGTVEKSTRTEL 239


>07_01_0116 -
           855122-855352,856733-857059,857095-858481,858636-858895
          Length = 734

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
 Frame = -3

Query: 690 SATIHSLMSW-FTVLVPYNSSSSHWLKNDS---CRNYPLVMTDPLLRSKFHLRFALALIS 523
           SA + SL+S  FTVL  Y+++  HWL+  S    +  P V+ D    +K  +   + L+ 
Sbjct: 261 SAAVWSLVSAAFTVLTAYSTTKLHWLQGGSTVVVQGGPTVVGD----NKADIFITMLLLV 316

Query: 522 CNSLLRVVFPLV 487
             +LL ++ PL+
Sbjct: 317 SIALLELLQPLL 328


>12_02_0704 -
           22293955-22294255,22294276-22294602,22294794-22294840,
           22297252-22297316,22297439-22297541
          Length = 280

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 22/105 (20%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
 Frame = +2

Query: 185 SFYLVFNKIMSTLKLISEVRSGLYSHW---RDVFEHVRSTAKIKHYADQNTSSCTPQERE 355
           + Y + + + +TLK       GL + W   ++ FE  ++T   +  A+Q  +  +  E  
Sbjct: 129 AMYFLRHHLCATLKNEHMATKGLLTLWTTLKEWFEKRKNTTLPQ--AEQEWAHLSVTEYN 186

Query: 356 CSIRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRRHHMAFT 490
            ++ + C N+S++       E+I  +    H++     R+H   T
Sbjct: 187 SALHQICINLSLSGKVVTDKEKIEKTLSTFHLSAMHSTRNHRRMT 231


>02_02_0082 +
           6615408-6615606,6615736-6615866,6615957-6616072,
           6617109-6617230,6617353-6617645,6617774-6617875,
           6620437-6620865,6621026-6621775,6621915-6622109
          Length = 778

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +2

Query: 284 VRSTAKIKHYADQNTS-SCTPQERECSIRKSCNNVSVTSMEDLSHEEIVTSYVLAHVAQF 460
           +RS  K  HYAD N+S  C   +    +RK   +  V  M D + E++V +     V   
Sbjct: 270 LRSPFKEAHYADSNSSEECQSIDEVAKLRKELQDTLV--MYDKACEDLVHAKKKIQVLSS 327

Query: 461 DC 466
           +C
Sbjct: 328 EC 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,192,434
Number of Sequences: 37544
Number of extensions: 397822
Number of successful extensions: 834
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)