Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D16
         (857 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10135| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.6  
SB_31409| Best HMM Match : Drf_FH1 (HMM E-Value=1.3)                   29   4.8  

>SB_10135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 36  LDCACLVHLLYPCYVV*FSD-CCTYWLKLDKC 128
           LD  C    L PCY     D CCTY L LD C
Sbjct: 162 LDSCCTYRFLDPCYTYRLLDPCCTYRL-LDPC 192



 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 36  LDCACLVHLLYPCYVV*FSD-CCTYWLKLDKC 128
           LD  C   LL PC    F D CCTY   LD C
Sbjct: 144 LDPCCTYRLLDPCCTYRFLDSCCTYRF-LDPC 174



 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 36  LDCACLVHLLYPCYVV*FSD-CCTYWLKLDKC 128
           LD  C   LL PC      D CCTY L LD C
Sbjct: 207 LDPCCTYRLLDPCCTYRLLDPCCTYCL-LDPC 237


>SB_31409| Best HMM Match : Drf_FH1 (HMM E-Value=1.3)
          Length = 391

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 654 VLVPYNSSSSHWLKNDSCRNYPLVMTDPLLRSKFH 550
           +L+P N +S    + D CR + L   DP   S++H
Sbjct: 198 ILLPKNRTSLERRRGDICRRHELERCDPRRSSRYH 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,594,674
Number of Sequences: 59808
Number of extensions: 513597
Number of successful extensions: 1142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)