Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D16
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative guan...    28   7.4  
AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical ...    28   7.4  
Z73969-8|CAA98239.1|  351|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AC024882-6|AAF60925.2|  340|Caenorhabditis elegans Seven tm rece...    28   9.8  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    28   9.8  

>AF303255-1|AAG50213.1|  573|Caenorhabditis elegans putative
           guanylate-binding protein protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 502 CISVSERHVMTSTVKLGNMSQNVRCDDFFVAQIF 401
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>AC024817-8|AAU05551.1|  535|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2b protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 502 CISVSERHVMTSTVKLGNMSQNVRCDDFFVAQIF 401
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>AC024817-7|AAK68527.1|  573|Caenorhabditis elegans Hypothetical
           protein Y54G2A.2a protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 502 CISVSERHVMTSTVKLGNMSQNVRCDDFFVAQIF 401
           C ++     M S+V++ N+SQN++ DD    Q+F
Sbjct: 171 CATIFALSTMISSVQIYNLSQNIQEDDLQHLQLF 204


>Z73969-8|CAA98239.1|  351|Caenorhabditis elegans Hypothetical
           protein C12D8.12 protein.
          Length = 351

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 361 AAFTFLWRTTTSILICIMFYFCCTSNMFKHVTPVR 257
           + F FL  TT S+ +  +F F C   M + V P R
Sbjct: 199 SGFNFLLMTTVSLFVIFIFGFKCYYEMTRVVVPGR 233


>AC024882-6|AAF60925.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 153 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 4   WICIGRFHPLRWTALAWCT 60
           W CI  F  L W  L WC+
Sbjct: 135 WFCIPLFGGLSWVFLCWCS 153


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
           protein Y53G8AM.4 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 344 VAYNY*YSDLHNVLFLLYFEHVQTRHASESRVLI 243
           + Y Y +    N+L+ LYFE V+    S  R+L+
Sbjct: 44  LVYFYGFCVYSNILYWLYFEFVERADHSSRRILV 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,745,122
Number of Sequences: 27780
Number of extensions: 376036
Number of successful extensions: 881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)