Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_D14
(843 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22) 104 1e-22
SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32) 104 1e-22
SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 3e-21
SB_50245| Best HMM Match : RVT_1 (HMM E-Value=1.4e-16) 64 1e-10
SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_50645| Best HMM Match : Syndecan (HMM E-Value=0.02) 32 0.51
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.67
SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15) 30 2.0
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 29 4.7
SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1) 28 8.2
>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
Length = 1797
Score = 104 bits (249), Expect = 1e-22
Identities = 53/130 (40%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Frame = +1
Query: 16 GKPLRQVSCVERWRYLGVDFEASGC---VTLEHSISSALNNISRAPLKPQQRLEILRAHL 186
GK + + +RYLG+ A G ++ L NI+RAPLKP QRL +L+ +
Sbjct: 835 GKVVPSIGPTSDYRYLGILISAGGARVRTDCREILTEGLKNITRAPLKPHQRLILLKTYF 894
Query: 187 IPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRA 366
+PRF H V ++D LR D +R A WL+LP D A++HAA+ DGGL IPS+R
Sbjct: 895 LPRFMHQLVLAPVNDGFLRWFDNCVRAACRSWLKLPHDTCMAFFHAAILDGGLGIPSLRY 954
Query: 367 TIPDLIVRRF 396
+P L RF
Sbjct: 955 LVPLLKRDRF 964
>SB_21856| Best HMM Match : RVT_1 (HMM E-Value=4.5e-32)
Length = 583
Score = 104 bits (249), Expect = 1e-22
Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Frame = +1
Query: 16 GKPLRQVSCVERWRYLGVDFEASGCVTLEHS-ISSALNNISRAPLKPQQRLEILRAHLIP 192
G +R + E ++YLG++ A G E++ AL+N+SRAPLKPQQRL +L+ +L+P
Sbjct: 273 GGEIRSLVANETYKYLGINIGAQGVKAAEYNAFKEALDNLSRAPLKPQQRLFLLKTYLLP 332
Query: 193 RFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVRATI 372
+ H V + L LD +RKAV WL+LP D +A+++A DGGL +PS+ I
Sbjct: 333 QLHHSLVLSRTTGKLLNSLDALVRKAVRGWLKLPHDTHRAFFYAHQADGGLNVPSLYHLI 392
Query: 373 P 375
P
Sbjct: 393 P 393
>SB_10715| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 99.5 bits (237), Expect = 3e-21
Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 4/159 (2%)
Frame = +1
Query: 13 GGKPLRQVSCVERWRYLGVDFEASGCV---TLEHSISSALNNISRAPLKPQQRLEILRAH 183
G + + V ++YLG+ A+G L ++ L+NISRAPLKP QRL ILR H
Sbjct: 215 GSQAIPAVKASGDYKYLGILIGANGAKQRSALADVLNQGLSNISRAPLKPFQRLTILREH 274
Query: 184 LIPRFQHGFVFGNISDDRLRMLDVQIRKAVGQWLRLPADVPKAYYHAAVQDGGLAIPSVR 363
IP+F H V + LR D IR AV WL++P D A+++A + DGGL IP +
Sbjct: 275 FIPQFLHQLVLTPVFAVFLRWFDNSIRSAVKSWLKVPKDTINAFFYARIADGGLGIPLLT 334
Query: 364 ATIPDLIVRRFGGLDSSPWSVARAAAKSDKIRKKL-RWA 477
+ IP L RF + ++ ++++A + R L +W+
Sbjct: 335 SKIPLLKKSRFENVFNACDAISKALSVDLYFRSNLEKWS 373
>SB_50245| Best HMM Match : RVT_1 (HMM E-Value=1.4e-16)
Length = 311
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +1
Query: 16 GKPLRQVSCVERWRYLGVDFEASGCVTLEHS-ISSALNNISRAPLKPQQRLEILRAHLIP 192
G +R + E ++YLG++ A G E++ AL+N+SRAPLKPQQRL +L+ +L+P
Sbjct: 230 GGEIRSLVANETYKYLGINIGAQGVKAAEYNAFKEALDNLSRAPLKPQQRLFMLKTYLLP 289
Query: 193 RFQHGFVFGNISDDRLRMLD 252
+ H V + L LD
Sbjct: 290 QLHHSLVLSRTTGKLLNSLD 309
>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +1
Query: 13 GGKPLRQVSCVERWRYLGVDFEASGCVTLEHSI-SSALNNISRAPLKPQQRL 165
GGK +R ++ E +YL + A G E+ + AL N+SRA LKPQQRL
Sbjct: 27 GGK-IRSLAANETNKYLSISIGAQGAKAAEYKVLKEALYNLSRARLKPQQRL 77
>SB_50645| Best HMM Match : Syndecan (HMM E-Value=0.02)
Length = 226
Score = 32.3 bits (70), Expect = 0.51
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%)
Frame = -1
Query: 759 LEAAGSKSRPSPSVEGPTSQSERGSSTDHPVRGRGTEDXXXXXXXXXXXXXXGHPEAALV 580
++ K++P+P+V G E GS+ G G+ D E
Sbjct: 33 IKPPNKKAKPTPTVSGDGEDGEEGSAIQGDSSGSGSGDEAVPTTIIPTEKVTITKELTKA 92
Query: 579 PARETTGP---GFCRAPPSSPSRRILVTTAEPAELFPGPPQFL 460
P T P P + + +TTAEP + P +F+
Sbjct: 93 PEVSTRKPKPKDRKTKEPKVETEEVEITTAEPVKPTEKPTEFV 135
>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 31.9 bits (69), Expect = 0.67
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 442 KSDKIRKKLRWAWKQLRRFSRRHKDPTAGTRR 537
K +I K+LRW +KQ R S+R K+ TA ++
Sbjct: 207 KDQEILKELRWHYKQYIRASKRKKEKTADKKQ 238
>SB_13875| Best HMM Match : rve (HMM E-Value=4.5e-15)
Length = 1216
Score = 30.3 bits (65), Expect = 2.0
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Frame = +1
Query: 196 FQHGFVFGNISDDRLRMLD-VQ------IRKAVGQWLRLPADVPKAYYHAAVQDGGLAIP 354
FQ +V+ N++D RL+++D +Q KA + R +PK Y ++ + DG L +
Sbjct: 546 FQDMYVYTNVADARLQVIDKIQDTNAEVCLKAEPKTKRESPSIPKQYVYSNLSDGNLVLG 605
Query: 355 S 357
S
Sbjct: 606 S 606
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 29.1 bits (62), Expect = 4.7
Identities = 27/66 (40%), Positives = 35/66 (53%)
Frame = -2
Query: 233 SSEMFPNTKPCWNLGIR*ALKISNLCWGLRGALEMLFRALLILCSNVTHPEASKSTPRYR 54
S M P T+ N+G + LKISNL G+R ML +AL + + H E +ST YR
Sbjct: 1353 SRVMDPTTRA--NIGKQRKLKISNLVKGVR----MLLKALKKI--SPEHNE-GESTSEYR 1403
Query: 53 HRSTQL 36
R QL
Sbjct: 1404 TRDAQL 1409
>SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1)
Length = 276
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 541 RSTKPRPCCFTGRDERRLWVP 603
RS +P P F G DERRLW P
Sbjct: 56 RSEQPTP--FVGSDERRLWHP 74
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,258,840
Number of Sequences: 59808
Number of extensions: 578531
Number of successful extensions: 2209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2208
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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