Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_D14
(843 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-10|CAE17898.2| 366|Caenorhabditis elegans Hypothetical p... 31 0.78
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 31 1.4
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 31 1.4
Z73899-3|CAA98075.1| 331|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z82074-1|CAB04928.2| 480|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z81583-3|CAB04672.2| 160|Caenorhabditis elegans Hypothetical pr... 28 9.5
AL132864-6|CAB63395.1| 480|Caenorhabditis elegans Hypothetical ... 28 9.5
>Z46381-10|CAE17898.2| 366|Caenorhabditis elegans Hypothetical
protein M01F1.9 protein.
Length = 366
Score = 31.5 bits (68), Expect = 0.78
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 188 IR*ALKISNLCWGLRGALEML-FRALLILCSNVTHPEASKSTPRYRHRST 42
IR + +SNL G +G +E L + +L ++C +S STP R R T
Sbjct: 21 IRITVTVSNLSRGKQGVVEQLAWGSLQLICERTIGATSSNSTPSSRPRPT 70
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 389 GVSGGSTRHHGQWQEPPPNLIRFVRNCGGPGNSSAG 496
G GGS + H Q Q+ P I+++ G GN+ G
Sbjct: 2124 GGGGGSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGG 2159
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 389 GVSGGSTRHHGQWQEPPPNLIRFVRNCGGPGNSSAG 496
G GGS + H Q Q+ P I+++ G GN+ G
Sbjct: 2124 GGGGGSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGG 2159
>Z73899-3|CAA98075.1| 331|Caenorhabditis elegans Hypothetical
protein ZK829.5 protein.
Length = 331
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 481 KQLRRFSRRHKDPTAGTRRWRSTKPRPCCFTGRDERRL 594
K + RFSR+ K +GT+ RS +P DE+ L
Sbjct: 199 KSMNRFSRKRKYEISGTKCQRSKRPAKLPVESLDEKEL 236
>Z82089-1|CAB05002.1| 983|Caenorhabditis elegans Hypothetical
protein ZK270.1 protein.
Length = 983
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 268 AVGQWLRLPADVPKAYYHAAVQDGGLAIPSVR 363
++G + +PA V YY A++Q+G ++ PS R
Sbjct: 843 SIGFSVDIPAHVSYHYYQASIQEGPMSPPSSR 874
>Z81511-2|CAB04167.1| 983|Caenorhabditis elegans Hypothetical
protein ZK270.1 protein.
Length = 983
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 268 AVGQWLRLPADVPKAYYHAAVQDGGLAIPSVR 363
++G + +PA V YY A++Q+G ++ PS R
Sbjct: 843 SIGFSVDIPAHVSYHYYQASIQEGPMSPPSSR 874
>Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical
protein C35A5.8 protein.
Length = 1078
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 130 ISRAPLKPQQRLEILRAHLIPRFQHGFVFGNIS 228
I+R PLK RLE+ H++ +F+ ++ I+
Sbjct: 523 IARFPLKGNLRLEVSFIHMLEQFRRAYIMDQIT 555
>Z82074-1|CAB04928.2| 480|Caenorhabditis elegans Hypothetical
protein W06H12.1 protein.
Length = 480
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 302 TSAGSLSHCPTAFRIWTSSILNRSSEMFPNTKP 204
TS G LS C + T+++ +RSSE P KP
Sbjct: 84 TSVGLLSDCHDSATSTTTTVSHRSSEEPPRRKP 116
>Z81583-3|CAB04672.2| 160|Caenorhabditis elegans Hypothetical
protein T02G6.3 protein.
Length = 160
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 489 PQVQPSSQGSDGWDSKVALDKTQALL 566
P+ P QG G+D ++ DKTQA +
Sbjct: 69 PKAVPKRQGGKGFDITISPDKTQATM 94
>AL132864-6|CAB63395.1| 480|Caenorhabditis elegans Hypothetical
protein W06H12.1 protein.
Length = 480
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 302 TSAGSLSHCPTAFRIWTSSILNRSSEMFPNTKP 204
TS G LS C + T+++ +RSSE P KP
Sbjct: 84 TSVGLLSDCHDSATSTTTTVSHRSSEEPPRRKP 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,456,559
Number of Sequences: 27780
Number of extensions: 421958
Number of successful extensions: 1176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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