Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_D10
(857 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 290 9e-79
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 281 3e-76
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 256 2e-68
At2g22340.1 68415.m02651 hypothetical protein 33 0.32
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 32 0.42
At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family... 30 1.7
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 2.3
At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin fa... 29 5.2
At2g34150.1 68415.m04180 expressed protein 29 5.2
At1g72710.1 68414.m08408 casein kinase, putative similar to case... 29 5.2
At1g11980.1 68414.m01384 ubiquitin family protein similar to Cha... 28 6.9
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 290 bits (711), Expect = 9e-79
Identities = 133/215 (61%), Positives = 165/215 (76%), Gaps = 1/215 (0%)
Frame = +1
Query: 85 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 264
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 265 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 444
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDP 131
Query: 445 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 624
DHQPI E + NIP+IA C+TDSP+RFVDI IP N K HSIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRG 191
Query: 625 VLPRDQRWDVVVDLFFYRDPEESE-KDEQQAKEQA 726
+ Q+WDV+VDLFFYR+PEE++ +DE +A QA
Sbjct: 192 TIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQA 226
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 281 bits (690), Expect = 3e-76
Identities = 127/211 (60%), Positives = 164/211 (77%), Gaps = 1/211 (0%)
Frame = +1
Query: 97 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 276
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 277 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 456
D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136
Query: 457 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 636
QPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG +
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196
Query: 637 DQRWDVVVDLFFYRDPEESEKD-EQQAKEQA 726
Q+WDV+VDLFFYR+PEE++++ +++A+ QA
Sbjct: 197 AQKWDVMVDLFFYREPEEAKQEGDEEAEVQA 227
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 256 bits (626), Expect = 2e-68
Identities = 115/189 (60%), Positives = 144/189 (76%)
Frame = +1
Query: 97 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 276
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 277 ADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDH 456
D+ V S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP DH
Sbjct: 77 KDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDH 136
Query: 457 QPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPR 636
QPI E + NIP IA C+TDSP+ FVDI IP N K HSIG ++WLLAR VL++RG +
Sbjct: 137 QPIKEGALGNIPTIAFCDTDSPMGFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTILA 196
Query: 637 DQRWDVVVD 663
Q+WDV+V+
Sbjct: 197 AQKWDVMVN 205
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.32
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 135 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 254
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 418 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD-IAIPCNTKSS 567
P ++V D + I EAS + IPV+A+ + + PL F + I P + S
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPARDS 181
>At1g04930.1 68414.m00490 hydroxyproline-rich glycoprotein family
protein Common family member: At2g32840 [Arabidopsis
thaliana]
Length = 332
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 628 LPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQAVVQLNXK*LL 756
LP+ D+ + DP+E DE + E+AV QL+ K LL
Sbjct: 251 LPKPLPVDLTTETSVPDDPDEESADEDKEDEEAVKQLSEKDLL 293
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 373 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 474
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At5g54855.1 68418.m06833 pollen Ole e 1 allergen and extensin
family protein contains Pfam domain, PF01190: Pollen
proteins Ole e I family
Length = 146
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +1
Query: 514 DSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 651
D L ++A+ C TKS + + ++ V + +P +RWD
Sbjct: 49 DHVLEGAEVAVLCITKSGEVVNYQAFTNSKGVYTVAETMPESERWD 94
>At2g34150.1 68415.m04180 expressed protein
Length = 700
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = -3
Query: 546 DSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTW 376
D +H+ W S + FSN L + +Q +QE+ E S D S TW
Sbjct: 308 DELIHQDPWAASEISSGTHSYSN-GFSNPLYDISGIQEHQESEEVESSCDTESIKTW 363
>At1g72710.1 68414.m08408 casein kinase, putative similar to casein
kinase I, delta isoform [Arabidopsis thaliana]
SWISS-PROT:P42158
Length = 465
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -2
Query: 706 VHPFHFLQGHGRRTNQPQHPSAGHGEAHHEASTLHVPTTTTSN 578
+ P +FL G GRR NQ G + + +++ H+P N
Sbjct: 129 IKPDNFLMGLGRRANQVYVIDFGLAKKYRDSNHQHIPYRENKN 171
>At1g11980.1 68414.m01384 ubiquitin family protein similar to Chain
A, Structure Of Ubiquitin-Like Protein, Rub1 GI:6729726
from [Arabidopsis thaliana]
Length = 78
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 201 PCDQLASYLGKTCSGCSCCRSHREPR*CVRHLITALRSACC 323
P Q Y GK + + + R V HL+ ALR CC
Sbjct: 38 PVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGGCC 78
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,464,724
Number of Sequences: 28952
Number of extensions: 452966
Number of successful extensions: 1160
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1999652000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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