Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D07
         (816 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.4  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    27   3.2  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.6  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    25   9.7  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   9.7  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 552 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTXY 686
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -3

Query: 655 LNIWIKPAFALLLHARFLSSLSWP*DTCVILWQM 554
           LN W+ P    L+   F +S  W     +ILW +
Sbjct: 261 LNDWVPPTVLYLMSLFFSTSGGWTEKVALILWSL 294


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 725 WHLLLKTLYXKGSIXRAFAVPMRTEH 648
           +H + + L   GSI   FAVP++ EH
Sbjct: 398 FHGIAELLEILGSIINGFAVPLKEEH 423


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 669  SPYAY*TSGSSQLLPFCSTRGF 604
            SPYA+ T  S+ L PF STR +
Sbjct: 1211 SPYAFSTVYSNCLNPFISTRSY 1232


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 141 GYLKRVIVTPAVYPRLLEFLHVDIQST 61
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,423,152
Number of Sequences: 5004
Number of extensions: 71972
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)