Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D06
         (905 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 230  CVSKEAGHQTSAESW 274
            C  K+ GH+ S  SW
Sbjct: 1152 CEEKKPGHKPSTSSW 1166


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 151  VFKAAHTSGPGQ*CSRFYVQELEAALLREQGGWSPNQCRIMGYR 282
            V   A TSG G+    FY+ E     + + G  S N   I  +R
Sbjct: 1372 VSNLAQTSGGGENKPIFYLDEAFQRRVTQIGSTSSNNPSISAFR 1415


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 151  VFKAAHTSGPGQ*CSRFYVQELEAALLREQGGWSPNQCRIMGYR 282
            V   A TSG G+    FY+ E     + + G  S N   I  +R
Sbjct: 1372 VSNLAQTSGGGENKPIFYLDEAFQRRVTQIGSTSSNNPSISAFR 1415


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,381
Number of Sequences: 336
Number of extensions: 3856
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)