Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D06
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   179   4e-46
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   179   4e-46
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    26   8.5  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  179 bits (436), Expect = 4e-46
 Identities = 84/138 (60%), Positives = 95/138 (68%)
 Frame = +2

Query: 176 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 355
           DLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGN
Sbjct: 35  DLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGN 94

Query: 356 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV 535
           MCR GRMFAPTK WR+WH                          ARGH IE+IPE+PLVV
Sbjct: 95  MCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVV 154

Query: 536 ADKVQEINKTKQAVIFLR 589
            D VQ   KTK+AV  L+
Sbjct: 155 DDAVQSFQKTKEAVALLK 172



 Score = 42.3 bits (95), Expect = 9e-05
 Identities = 24/49 (48%), Positives = 31/49 (63%)
 Frame = +1

Query: 616 LRCTRSXRLRAGXGKMRNRRPIQR*GGPHNLSPRNQGSXXAPFRNIPGV 762
           ++   S +LRAG GK+RNRR +QR  GP  +   + G   A FRNIPGV
Sbjct: 181 IKVANSRKLRAGKGKLRNRRHVQR-RGPLVVFNEDTGIVKA-FRNIPGV 227


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  179 bits (436), Expect = 4e-46
 Identities = 84/138 (60%), Positives = 95/138 (68%)
 Frame = +2

Query: 176 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 355
           DLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGN
Sbjct: 35  DLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGN 94

Query: 356 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV 535
           MCR GRMFAPTK WR+WH                          ARGH IE+IPE+PLVV
Sbjct: 95  MCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVV 154

Query: 536 ADKVQEINKTKQAVIFLR 589
            D VQ   KTK+AV  L+
Sbjct: 155 DDAVQSFQKTKEAVALLK 172



 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 24/49 (48%), Positives = 31/49 (63%)
 Frame = +1

Query: 616 LRCTRSXRLRAGXGKMRNRRPIQR*GGPHNLSPRNQGSXXAPFRNIPGV 762
           ++   S +LRAG GK+RNRR +QR  GP  +   + G   A FRNIPGV
Sbjct: 181 VKVANSRKLRAGKGKLRNRRHVQR-RGPLVVFNEDAGIVKA-FRNIPGV 227


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 539 DKVQEINKTKQAVIFLRAPQG 601
           DK+ +I KT Q+V FL+  QG
Sbjct: 55  DKIPDIRKTLQSVQFLKERQG 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,967
Number of Sequences: 5004
Number of extensions: 57859
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)