Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_D06
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 174 7e-44
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 171 9e-43
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.18
03_05_0366 - 23505755-23506441 29 3.8
04_01_0588 + 7657510-7657992,7658397-7658843 29 6.7
02_04_0457 + 23093020-23093343,23093798-23093806 29 6.7
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 28 8.9
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 174 bits (424), Expect = 7e-44
Identities = 81/138 (58%), Positives = 93/138 (67%)
Frame = +2
Query: 176 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 355
D+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGN
Sbjct: 39 DVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGN 98
Query: 356 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV 535
MCRGGRMFAPTK WR+WH ARGH IE +PELPLV+
Sbjct: 99 MCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVI 158
Query: 536 ADKVQEINKTKQAVIFLR 589
+D + I KT QA+ L+
Sbjct: 159 SDSAESIEKTSQAIKILK 176
Score = 34.3 bits (75), Expect = 0.14
Identities = 20/44 (45%), Positives = 23/44 (52%)
Frame = +1
Query: 631 SXRLRAGXGKMRNRRPIQR*GGPHNLSPRNQGSXXAPFRNIPGV 762
S +R G GKMRNRR I R GP + FRN+PGV
Sbjct: 190 SVGIRPGKGKMRNRRYINR-KGPLIVYGTEGSKIVKAFRNLPGV 232
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 171 bits (415), Expect = 9e-43
Identities = 80/138 (57%), Positives = 92/138 (66%)
Frame = +2
Query: 176 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 355
D+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGN
Sbjct: 38 DVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGN 97
Query: 356 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV 535
MCRGGRMFAPTK WRRWH ARGH IE +PE PLVV
Sbjct: 98 MCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEGVPEFPLVV 157
Query: 536 ADKVQEINKTKQAVIFLR 589
+D ++ I KT Q++ L+
Sbjct: 158 SDSIESIEKTAQSIKVLK 175
Score = 36.7 bits (81), Expect = 0.025
Identities = 21/44 (47%), Positives = 24/44 (54%)
Frame = +1
Query: 631 SXRLRAGXGKMRNRRPIQR*GGPHNLSPRNQGSXXAPFRNIPGV 762
S +RAG GKMRNRR I R GP + FRN+PGV
Sbjct: 189 SVAIRAGKGKMRNRRYINR-KGPLIVYGTEGSKVVKAFRNLPGV 231
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.18
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 263 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 373
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>03_05_0366 - 23505755-23506441
Length = 228
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 224 PYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGA 346
P C S E + +AES TG A R R+ G T+ + + A
Sbjct: 134 PRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPTNDNDEEA 174
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 6.7
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 185 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 355
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 356 MCRGGRMFAPTKPWRRW 406
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 248 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 352
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 28.3 bits (60), Expect = 8.9
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = -1
Query: 341 PDRTYEYHHHGHAEFGRQHVRYPMIRHWFGDQPP 240
P + +HHHGH + + H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,664,085
Number of Sequences: 37544
Number of extensions: 508125
Number of successful extensions: 1500
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1492
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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