Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_D06
(905 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 184 7e-47
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 35 0.079
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 32 0.73
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23) 30 2.2
SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3) 30 2.2
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 5.2
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 5.2
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 29 5.2
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05) 28 9.0
SB_45852| Best HMM Match : I-set (HMM E-Value=0) 28 9.0
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 9.0
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 9.0
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 184 bits (449), Expect = 7e-47
Identities = 86/139 (61%), Positives = 98/139 (70%)
Frame = +2
Query: 176 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 355
DLVN VH +++KN RQPY V+K AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN
Sbjct: 32 DLVNFVHSNIAKNKRQPYAVNKLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 91
Query: 356 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV 535
MCRGGRMFAPTK WR+WH ARGH IEKI E+PLV+
Sbjct: 92 MCRGGRMFAPTKTWRKWHTKVNVQQRRFAVCSALAASALPALIMARGHRIEKIAEVPLVI 151
Query: 536 ADKVQEINKTKQAVIFLRA 592
+D ++ + KT AV L+A
Sbjct: 152 SDAIESVTKTSAAVKLLKA 170
Score = 45.2 bits (102), Expect = 7e-05
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +1
Query: 619 RCTRSXRLRAGXGKMRNRRPIQR*GGPHNLSPRNQGSXXAPFRNIPGV 762
+C S ++RAG GKMRNRR + R GP + +QG A FRN+PGV
Sbjct: 179 KCIDSKKIRAGKGKMRNRRTVMR-KGPLIIYNNDQGLRQA-FRNLPGV 224
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 35.1 bits (77), Expect = 0.079
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 368 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVRYPMIRHWF 255
HH CY H Y Y+ H H + R H YP RH++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 32.3 bits (70), Expect = 0.55
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 353 YRRHPDRTYEYHHHGHAEFGRQHVRYPMIRHWFGDQPP 240
Y +HP T+ YH H R H ++P + H + Q P
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTHRYQYQHP 268
Score = 31.1 bits (67), Expect = 1.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 353 YRRHPDRTYEYHHHGHAEFGRQHVRYPMIRHWFGDQ 246
Y +HP T+ YHH H + ++ ++P + H + Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.9 bits (69), Expect = 0.73
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 368 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVRY 276
HH RH R + +HHH H E+ R+H RY
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH-RY 353
>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
Length = 998
Score = 30.3 bits (65), Expect = 2.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 523 SPGCSRQSPGDQQDQTGCHLPEGASRHGLISLRCTRSXRLRAG 651
+PGC+R G ++ G + G +R ++ CTRS ++ +G
Sbjct: 80 TPGCTRSYQGSEKSVRGVQVISGHARSYPVTPGCTRSYQVISG 122
>SB_12542| Best HMM Match : Collagen (HMM E-Value=1.3)
Length = 532
Score = 30.3 bits (65), Expect = 2.2
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 205 VQELEAALLREQGGWSPNQCRIMGYRTCCRPNSACPWWWYS*VR-SGC 345
+ E A L+ G P++ I+ +R CCR N C W+W R +GC
Sbjct: 221 ITEAAAVLIVVNGTGVPDRL-IVSFRGCCRVN--CNWYWSGWSRCTGC 265
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 377 TYVHHDTCYRRHPDRTYEYHHHGHA 303
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 5.2
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -1
Query: 380 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVRY 276
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 257 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 373
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 176 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 301
D+ NDV ++++ + PY + H T E TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 529 GCSRQSPGDQQDQTGCHLPEGASRH 603
G ++QSP D+Q Q G + PEG+ H
Sbjct: 1354 GETKQSPPDKQCQPGHYCPEGSGLH 1378
>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
Length = 1098
Score = 28.3 bits (60), Expect = 9.0
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +2
Query: 275 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 403
G GR + R P GGG R G +G M GG P W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310
>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
Length = 1122
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 374 YVHHDTCYRR-HPDRTYEYHHHGHAEFGRQHVRYPMIRHWFGDQP 243
Y HH + H + +++HHH H H R+ +I G++P
Sbjct: 1032 YHHHRRRHHHYHHQQQHQFHHHHHHTHYNYHYRHFLIIDRPGNKP 1076
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 9.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -1
Query: 368 HHDTCYRRHPDRTYEYHHH 312
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 374 YVHHDTCYRRHPDRTYEYHHHGH 306
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,417,434
Number of Sequences: 59808
Number of extensions: 525852
Number of successful extensions: 1342
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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