Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D06
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   171   8e-43
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   6.0  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  171 bits (415), Expect = 8e-43
 Identities = 86/166 (51%), Positives = 104/166 (62%)
 Frame = +2

Query: 92  SVYSEKSETVQGCSQAXXXXXXXXXXXXDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAES 271
           +VY EK E  Q  SQ             DLV+ +   + +N RQ + V+ +AG Q SAES
Sbjct: 8   TVYDEKYEATQ--SQIRLPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQHSAES 65

Query: 272 WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXX 451
           WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH              
Sbjct: 66  WGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSS 125

Query: 452 XXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINKTKQAVIFLR 589
                      QARGH+I+++ E+PLVV+DKV+   KTK+AV+FLR
Sbjct: 126 AIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLR 171



 Score = 31.5 bits (68), Expect = 0.86
 Identities = 21/44 (47%), Positives = 27/44 (61%)
 Frame = +1

Query: 631 SXRLRAGXGKMRNRRPIQR*GGPHNLSPRNQGSXXAPFRNIPGV 762
           S R RAG GK+RNR+  Q+  GP  +  ++     A FRNIPGV
Sbjct: 185 SKRNRAGKGKLRNRQHKQK-LGPVVIYGQDAECARA-FRNIPGV 226


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +2

Query: 212 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 382
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 383 PTKP 394
             KP
Sbjct: 197 APKP 200


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 368 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 285
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 277 YRTCCRPNSACPWWWYS*VRSGC--LR*HVSWWTYVRPH 387
           YRTCC+    C ++++  + +GC   R   + + Y  PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,163,770
Number of Sequences: 27780
Number of extensions: 368071
Number of successful extensions: 859
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)