Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D06
         (905 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   178   4e-45
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   178   4e-45
At4g38210.1 68417.m05393 expansin, putative (EXP20) similar to a...    29   5.6  
At1g52695.1 68414.m05951 phospholipase/carboxylesterase family p...    29   5.6  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    28   9.8  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  178 bits (434), Expect = 4e-45
 Identities = 82/138 (59%), Positives = 94/138 (68%)
 Frame = +2

Query: 176 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 355
           D+VN VH  +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGN
Sbjct: 41  DIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGN 100

Query: 356 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV 535
           MCRGGRMFAPTK WRRWH                          ARGH IE +PE+PLVV
Sbjct: 101 MCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVV 160

Query: 536 ADKVQEINKTKQAVIFLR 589
           +D  + + KT  A+  L+
Sbjct: 161 SDSAEAVEKTSAAIKVLK 178



 Score = 34.7 bits (76), Expect = 0.085
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +1

Query: 619 RCTRSXRLRAGXGKMRNRRPIQR*GGPHNLSPRNQGSXXAPFRNIPGV 762
           +   S  +R G GKMRNRR I R  GP  +           FRN+PGV
Sbjct: 188 KAKNSIGIRPGKGKMRNRRYISR-KGPLVVFGTEGAKIVKAFRNLPGV 234


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  178 bits (434), Expect = 4e-45
 Identities = 82/138 (59%), Positives = 94/138 (68%)
 Frame = +2

Query: 176 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 355
           D+VN VH  +S NSRQPY VSK+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGN
Sbjct: 40  DIVNFVHAQISNNSRQPYAVSKKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGN 99

Query: 356 MCRGGRMFAPTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVV 535
           MCRGGRMFAPTK WRRWH                          ARGH IE +PE+PLVV
Sbjct: 100 MCRGGRMFAPTKIWRRWHRRVNVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVV 159

Query: 536 ADKVQEINKTKQAVIFLR 589
           +D  + + KT  A+  L+
Sbjct: 160 SDSAEAVEKTSAAIKVLK 177



 Score = 34.7 bits (76), Expect = 0.085
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = +1

Query: 619 RCTRSXRLRAGXGKMRNRRPIQR*GGPHNLSPRNQGSXXAPFRNIPGV 762
           +   S  +R G GKMRNRR I R  GP  +           FRN+PGV
Sbjct: 187 KAKNSIGIRPGKGKMRNRRYISR-KGPLVVYGTEGSKIVKAFRNLPGV 233


>At4g38210.1 68417.m05393 expansin, putative (EXP20) similar to
           alpha-expansin 3 GI:6942322 from [Triphysaria
           versicolor]; alpha-expansin gene family, PMID:11641069
          Length = 256

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = -2

Query: 544 FVGYNQGKFGNLFNNVSSSLNECWDAGSSN---GCRQGRSPLSEVDATMPTPP 395
           F GY+ G  G LFN   SS   C +    N    C QG SP   V AT   PP
Sbjct: 61  FAGYSAGLSGKLFNR-GSSCGACLEVRCVNHIRWCLQG-SPSVVVTATDFCPP 111


>At1g52695.1 68414.m05951 phospholipase/carboxylesterase family
           protein contains Pfam profile: PF02230
           phospholipase/carboxylesterase; supported by full length
           cDNA gi:26450919 from [Arabidopsis thaliana]
          Length = 231

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 510 RFPNFPWL*PTKSRRSTRPNRLSSS*GRL-KAWSDILKV 623
           R PN  W+ PT  RR     R++S  G +  AW DI KV
Sbjct: 50  RLPNIKWICPTAPRR-----RVTSLGGEITNAWCDIAKV 83


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 368 HHDTCYRRHPDRTYEYHHHGHAEF 297
           HH   Y  H    Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,521,183
Number of Sequences: 28952
Number of extensions: 351971
Number of successful extensions: 951
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)