Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D05
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        78   2e-15
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        40   4e-04
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe...    29   0.89 
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    27   3.6  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    26   6.3  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    26   6.3  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   6.3  
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma...    26   8.3  

>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 4/216 (1%)
 Frame = +2

Query: 80  FLLCLFVSVNTQSVHRRFEYKYSFKPPYLAQKDGSVPFWEYGGNAIASGES-VRLAPSLR 256
           FLL +F  V           + S + PY+     ++ +WEYGG+ +   ++ + L   ++
Sbjct: 9   FLLGIFGFVLGALAETSHLERLSLEAPYINHGMRNL-WWEYGGSTVIDRKNGIFLTQDVQ 67

Query: 257 SQKGAIWTKQPINFDWWEVDIMFKITGRGR-IGADGLAFWYTTQRGDYTGEVFGSSDKWN 433
           +Q+G I T+ P     +EV   F+I      +  DGLAF+   +R    G VFG +DK+N
Sbjct: 68  NQQGWISTRLPTPSSSFEVLFQFRINSESTSLFGDGLAFFLAAERAK-PGPVFGFTDKFN 126

Query: 434 GLGVIFDSFDNDNKHN-NPYIMAVVNDGTKVFDHKSDGTTQLLSGC-LRDFRDKPFPTRA 607
           G G+  D+++N       P ++ +  DG   +D+++DG    ++ C   + R   +    
Sbjct: 127 GYGIFIDTYNNHRPGTLFPRVIVMKGDGHTPYDYENDGKANEIASCSALNVRGNDY-NLG 185

Query: 608 KIEYYMNTLTVYFHNGMTNNEQDYELCFRAENVVLP 715
           K++Y  N   + F          +  CF    V LP
Sbjct: 186 KLKYDKNAKKLRFEIAY-QGSSSFIKCFDLNEVELP 220


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 40.3 bits (90), Expect = 4e-04
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
 Frame = +2

Query: 194 WEYGGNAIASGESVRLAP--SLRSQKGAIWTKQPINFDWWEVDIMFKITGRGRIGADGLA 367
           W++ G+       V L    S  ++ G++W+   +    W++   F +           A
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQVGWQLSTSF-VAHVSENENTFFA 97

Query: 368 FWYTTQRGDYTGEVFGSSDKWNGLGVIFDSFDNDNK 475
            WYT+  G   G VFG+SDKW+GL +I    D   K
Sbjct: 98  IWYTSAVGS-EGPVFGASDKWDGL-LISQEIDQTGK 131


>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 260 QKGAIWTKQPINFDWWEVDIMFKI 331
           +KG+IW ++PI+ +W + D  F +
Sbjct: 206 KKGSIWIREPIDQEWHQQDKKFSV 229


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 435 PFHLSDEPNTSPV*SPRCVVYQNA 364
           PFHLS+E + + V +PR +V  +A
Sbjct: 263 PFHLSEECSNASVAAPRAIVMTSA 286


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = -1

Query: 144 YLYSKRLCTDCVFTLTNR---HNKNAHTINLKFKNSIATLPCETR 19
           +++SK+ C + V TLTNR   +++    +++  + ++A L  E R
Sbjct: 556 FVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKEDR 600


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 434 RSICPTSRTLRRCSRLAVWYTRMPSRQHLFCLC 336
           R++ PTS  LRR + + + +  M +   L C C
Sbjct: 212 RTVVPTSEYLRRLTAVRLQFDIMKAETMLLCRC 244


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/49 (24%), Positives = 20/49 (40%)
 Frame = +2

Query: 14   LERVSHGKVAMEFLNFKLIVCAFLLCLFVSVNTQSVHRRFEYKYSFKPP 160
            +E + H     +   F + +C +L     S+N   V   F    S +PP
Sbjct: 1648 METLKHASPTFKAYQFVVRICHYLTSKVKSINKDQVFNAFSPDVSERPP 1696


>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 635 TVYFHNGMTNNEQDYELCFRAENV 706
           +V FH+G  NN +D    FR EN+
Sbjct: 165 SVMFHSGQLNNVKDICNKFRPENI 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,371,470
Number of Sequences: 5004
Number of extensions: 72912
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)