Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_D05
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116... 31 1.6
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 30 2.1
01_06_0919 - 32993752-32993856,32994383-32994592,32994666-329952... 30 2.1
04_03_0703 - 18870287-18871351,18871542-18871733 29 5.0
03_04_0118 + 17418558-17419310 29 5.0
05_04_0320 + 20181560-20182063,20182513-20182853,20183159-201838... 29 6.6
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288... 29 6.6
>05_06_0106 -
25611239-25611295,25611388-25611477,25611582-25611669,
25611757-25611836,25611968-25612120,25612403-25612546,
25612633-25612884,25612985-25613116,25613207-25613287,
25613368-25613488,25613930-25614025,25614195-25614298,
25614481-25614567,25614690-25614803,25614871-25614930,
25615007-25615102,25615316-25615366,25615457-25615562,
25615642-25615713,25616117-25616172,25616446-25616508,
25616636-25616764
Length = 743
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +2
Query: 5 GFSLERVSHGKVAMEFLNFKLIVCAFLLCLFVSVNTQSVHRRFEYKYSFKPPYLAQKDGS 184
G S R + G V F + V AF + LF + +SV F+ ++F+ K+G
Sbjct: 12 GGSRLRNACGGVLCAFTLLLIGVLAFSIRLFSVIKYESVIHEFDPYFNFRVTQFLSKNGI 71
Query: 185 VPFWEY 202
FW +
Sbjct: 72 YEFWNW 77
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -2
Query: 725 SAPGAAPRSRRGSTARSPARCSSFRCGS-RQLTCSCSILSW 606
SAP A P +T PA+ RC S R + C I+ W
Sbjct: 21 SAPSARPEYHECATCHGPAKTRCSRCKSVRYCSGKCQIIHW 61
>01_06_0919 -
32993752-32993856,32994383-32994592,32994666-32995220,
32995705-32995926,32996381-32996511,32997456-32998353,
32998453-32998530,32998612-32998683,32998728-32998763,
32999413-33000353,33000531-33000659,33000751-33000894,
33000994-33001060,33002434-33002502,33003144-33003278
Length = 1263
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +2
Query: 404 EVFGSSDKWNGLGVIFDSFDNDNKHNNPYIMAVVNDGTKVFDHKSDGTTQLLS 562
E+F + + W+ D H+ +M +N+G + FDH D + +LLS
Sbjct: 91 EIFENKENWSNYS------HTDPSHSQMDVMVELNNGGESFDHSEDTSYRLLS 137
>04_03_0703 - 18870287-18871351,18871542-18871733
Length = 418
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 713 AAPRSRRGSTARSPARCSSFRCGSRQLTCS 624
A P S ST+ S ARC CG+R+ T S
Sbjct: 243 AGPPSTGSSTSMSRARCCGSACGTRRSTWS 272
>03_04_0118 + 17418558-17419310
Length = 250
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 393 SPRCVVYQNAKPSAPILPLPVI-LNMISTSHQSKLMGCLVHIAPFWLRSDGARRTLSPDA 217
+P C++ +P I P I +++++ +K M C+++ + F A R L+ +
Sbjct: 133 APDCILMMEVEPKLEITMGPSITVSVLAHRKDTKKMACVINKSTFDYIDSNAARALAYEY 192
Query: 216 IAFPP 202
+ F P
Sbjct: 193 LQFSP 197
>05_04_0320 +
20181560-20182063,20182513-20182853,20183159-20183819,
20183954-20184112
Length = 554
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = -3
Query: 436 TVPFVRRAEHFAGVVASLCGIPECQAVSTYSASAGNLEHDIDLPPVKVNGLFGPYSPLLA 257
TV E +++ C + + + + T NL DI+ V + +F PY+PL+
Sbjct: 179 TVDLKHELEQLLLLISGRCLLGK-EVMGTKFDEVCNLFRDIE-GGVNLMSVFFPYTPLIP 236
Query: 256 SKRRRE 239
S RRR+
Sbjct: 237 SNRRRD 242
>03_02_0936 -
12528336-12528379,12528516-12528602,12528696-12528809,
12528895-12529120,12529200-12529523,12529603-12529773,
12529870-12530100,12530291-12530479,12531176-12531178
Length = 462
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -3
Query: 421 RRAEHFAGVVASLCGIPECQAVSTYSASAGNLEHDIDLPPVKVNGLFGPYSPLLASK 251
R + FAG+ CG V +A AG L+H L +N ++ LASK
Sbjct: 82 RYLDAFAGIATVCCGHCHPDVVGAIAAQAGRLQHSTVL---YLNHAIADFAEALASK 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,826,245
Number of Sequences: 37544
Number of extensions: 548430
Number of successful extensions: 1605
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1603
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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