Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D05
         (891 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18398| Best HMM Match : Lectin_leg-like (HMM E-Value=2.8026e-45)   188   4e-48
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_10087| Best HMM Match : VWA (HMM E-Value=4.00001e-40)               31   1.7  
SB_49826| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.9  
SB_15115| Best HMM Match : ResIII (HMM E-Value=0.24)                   29   3.8  
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)                 29   5.1  
SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)                 29   5.1  
SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0)                        29   5.1  
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                29   6.7  
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.7  
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.8  
SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)                 28   8.8  
SB_40935| Best HMM Match : LRR_1 (HMM E-Value=0.035)                   28   8.8  

>SB_18398| Best HMM Match : Lectin_leg-like (HMM E-Value=2.8026e-45)
          Length = 414

 Score =  188 bits (459), Expect = 4e-48
 Identities = 79/145 (54%), Positives = 105/145 (72%)
 Frame = +2

Query: 242 APSLRSQKGAIWTKQPINFDWWEVDIMFKITGRGRIGADGLAFWYTTQRGDYTGEVFGSS 421
           A SL SQ G +WT      +WWE+++ F++TGRGR+GADGLA W+T + G+  G VFGSS
Sbjct: 26  AISLPSQIGFMWTANKFTSEWWEIEVSFRVTGRGRVGADGLAIWFTEKPGE-EGPVFGSS 84

Query: 422 DKWNGLGVIFDSFDNDNKHNNPYIMAVVNDGTKVFDHKSDGTTQLLSGCLRDFRDKPFPT 601
           DKW GLGV+ DSFDND + NNP++  +VNDGTK ++H +DG  Q L GCLRDFR++P P 
Sbjct: 85  DKWTGLGVLCDSFDNDGQQNNPFVSVMVNDGTKNYEHYNDGKNQHLGGCLRDFRNRPHPV 144

Query: 602 RAKIEYYMNTLTVYFHNGMTNNEQD 676
           R ++ YY N LT    +GM+ +EQD
Sbjct: 145 RVRVRYYQNVLTEKSESGMSKDEQD 169


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +2

Query: 467 DNKHNNPYIMAVVNDGTKVFDHKSDGTTQLLSGCLRDFRDKPFPTRAKIEY--YMNTLTV 640
           +N H +PYI A+V +GT  +DH  DGT   + GC   FR     T A I Y      LT+
Sbjct: 34  NNVHEHPYISAMVGNGTLPYDHDRDGTHSQVEGCSAQFRGLTHDTFALIRYSTSQERLTL 93

Query: 641 YFHNGMTNNEQDYELCFRAENVVLPPG 721
                  + + ++  CF    V LP G
Sbjct: 94  LVD---VDGKNEWRECFDVGGVKLPTG 117



 Score = 33.9 bits (74), Expect = 0.18
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 182 SVPFWEYGGNAIASGESVRLAPSLRSQKGAIW 277
           ++P W++ G+   S   +RL P  +S++G++W
Sbjct: 2   TIPNWDFHGSTFVSSNYIRLTPDHQSKQGSLW 33



 Score = 30.7 bits (66), Expect = 1.7
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 714 PRGGXFGLSAATGGLADXHEVI 779
           P G  +G+SAATG LAD H++I
Sbjct: 115 PTGLYWGVSAATGQLADNHDII 136


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = -3

Query: 367 CQAVSTYSASAGN--LEHDIDLP-PVKVNGLFGPYSPLLASKRRRETDALP*CYCVSTIL 197
           C+++S  +AS G   L+ D   P PV+   L  P SPL + +  ++ D +   Y    + 
Sbjct: 507 CRSISDSAASCGMDILQSDTPRPQPVRKRALEAPVSPLPSKEELQQADKMAKEYSERNLR 566

Query: 196 PKRHR 182
           P R R
Sbjct: 567 PSRKR 571


>SB_10087| Best HMM Match : VWA (HMM E-Value=4.00001e-40)
          Length = 357

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +2

Query: 539 DGTTQLLS--GCLRDFRDKPFPTRAKIEYYMN 628
           DGT Q+L   GC   ++DKPFP RA  + Y N
Sbjct: 34  DGTKQILKKIGC---YKDKPFPNRALRDLYHN 62


>SB_49826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +2

Query: 344 RIGADGLAFWYTTQRGDYTGEVFGSSDKWNGLGVIFDSFDNDNKHNNPYIMAVVND--GT 517
           R+  DGL +   + +G Y   +  +S  ++G+  +   F +D K+   Y M+        
Sbjct: 62  RVDRDGLIWTNASSQGKYPRYIVSTSWPYHGVQPVSQGFASDQKYQGIYPMSTHQGLASD 121

Query: 518 KVFDHKSDGTTQLLSGC 568
           K F H ++    ++  C
Sbjct: 122 KRFSHINNTLPNVMQKC 138


>SB_15115| Best HMM Match : ResIII (HMM E-Value=0.24)
          Length = 1179

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = -2

Query: 677  SPARCSSFRCGSRQLTCSCSILSWPGSGTACP*SRADIRTGAEWCRHSYDQ 525
            S  RC    CG+   TC C        G+A P SR     G  WC+  Y Q
Sbjct: 873  SDYRCLCEDCGNPYSTCDC--------GSAAPSSRLHDIKGRIWCQPDYQQ 915


>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
          Length = 4607

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 159  GGLNEYLYSKRLCTDCVFTLT 97
            GGL E+++SKRL  DC   LT
Sbjct: 4318 GGLREFVFSKRLFHDCAQILT 4338


>SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)
          Length = 354

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -1

Query: 471 LSLSKESNMTPRPFHLSDEPNTSPV*SPRCVVYQNAKPSAPILPLPVILNMISTSHQSKL 292
           + LS E       FH+   P+     +    +Y N+KP        +ILNM  +     L
Sbjct: 9   VGLSYEGKTAISAFHVL--PSLLSTVANVLTIYVNSKPRMRTTTNILILNMAVSDVIVTL 66

Query: 291 MGCLVHIAPFW 259
           +GC + +A FW
Sbjct: 67  IGCPITVAWFW 77


>SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 818

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 563 GCLRDFRDKPFPTRAKIEYYMNTLTVYFHNGMTNNEQDYELCFRAENVVLPP 718
           GC +D RD+  P      Y      V F    +NN+Q ++ C+       PP
Sbjct: 31  GCFKDSRDRALPV-----YIHRVSGVDFKEDGSNNQQFFQQCYEKAKAHKPP 77


>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1155

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 403 AGVVASLCGIPECQAVSTYSASAGNLEHDI 314
           AGV  S CG+PE Q +  Y    G  EH++
Sbjct: 283 AGVPESPCGLPEIQQIQRYLGERG-FEHNV 311


>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 357 TAWHSGIPHSEATTPAKCSARRTNGTV 437
           T +HSG   +  T PA+CS+ R NG V
Sbjct: 593 TEFHSGESGASDTYPAQCSSLRKNGHV 619


>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 722 APGAAPRSRRGSTARSPARCSSFRCGSR 639
           +P + PRSR GS  R+P   +S R  SR
Sbjct: 344 SPTSTPRSRTGSRTRTPPTPTSSRASSR 371


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 422 DKWNGLGVIFDSFDNDNKHNNPYIMAVVNDGTKVFDHKSDGTTQLLSG 565
           D ++G+  + DS D+D+   +  I+  VND   VF      T ++  G
Sbjct: 30  DHYDGVDDVDDSDDDDDDDEDDIILDDVNDNAPVFSRPEGYTFEVQEG 77


>SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)
          Length = 354

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 378 VYQNAKPSAPILPLPVILNMISTSHQSKLMGCLVHIAPFW 259
           +Y N+KP        +ILNM        L+GC + +A FW
Sbjct: 38  IYVNSKPRMRTTTNILILNMAVGDVTVTLIGCPITVAWFW 77


>SB_40935| Best HMM Match : LRR_1 (HMM E-Value=0.035)
          Length = 428

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 431 SICPTSRTLRRCSRLAVWYTRMPSRQHLFCLC 336
           ++C      R   R+  + ++ P RQ L+CLC
Sbjct: 133 NLCQKRDKFREMVRIKCYCSKQPYRQRLYCLC 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,751,597
Number of Sequences: 59808
Number of extensions: 598963
Number of successful extensions: 1665
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1662
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2550281014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)