Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D05
         (891 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11880.1 68414.m01370 expressed protein contains Pfam profile...    31   1.0  
At1g44130.1 68414.m05097 nucellin protein, putative similar to n...    30   1.8  
At5g19690.1 68418.m02342 oligosaccharyl transferase STT3 subunit...    28   7.2  

>At1g11880.1 68414.m01370 expressed protein contains Pfam profile
           PF04188: Protein of unknown function (DUF409)
          Length = 489

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 16/56 (28%), Positives = 30/56 (53%)
 Frame = +2

Query: 26  SHGKVAMEFLNFKLIVCAFLLCLFVSVNTQSVHRRFEYKYSFKPPYLAQKDGSVPF 193
           S+ K   E +  K  + + LL LF+++  +S+ + ++   +  PP L  K+ S PF
Sbjct: 7   SNSKSRKETILIKYAIFSRLLVLFLTILWRSLLQPYDTSAALNPPCLYHKEDSFPF 62


>At1g44130.1 68414.m05097 nucellin protein, putative similar to
           nucellin GI:2290202 from [Hordeum vulgare]
          Length = 405

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
 Frame = +2

Query: 374 YTTQRGDYTGEVFGSSDKWNGLGVIFDSFDNDNKHNNPYIMAVVN---DGTKVFDHKSDG 544
           YTT   D      G      GL +IFD+  +    N+     ++N   +  KV   K   
Sbjct: 241 YTTGPADLLFN--GKPTGLKGLKLIFDTGSSYTYFNSKAYQTIINLIGNDLKVSPLKVAK 298

Query: 545 TTQLLSGCLRDFRDKPFPTRAKIEYYMNTLTVYFHNGMTNNE 670
             + L  C +    KPF +  +++ +  T+T+ F NG  N +
Sbjct: 299 EDKTLPICWKGA--KPFKSVLEVKNFFKTITINFTNGRRNTQ 338


>At5g19690.1 68418.m02342 oligosaccharyl transferase STT3 subunit
           family protein similar to SP|P39007 Oligosaccharyl
           transferase STT3 subunit {Saccharomyces cerevisiae};
           contains Pfam profile PF02516: Oligosaccharyl
           transferase STT3 subunit
          Length = 779

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +2

Query: 20  RVSHGKVAMEFLNFKLIVCAFLLCLFVSVNTQSVHRRFEYKYSFKPPYLAQKDGSVPFWE 199
           R + G V    +   + V AF + LF  +  +SV   F+  ++++      K+G   FW 
Sbjct: 16  RNAFGNVLSVLILVLIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLSKNGIYEFWN 75

Query: 200 Y 202
           +
Sbjct: 76  W 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,220,476
Number of Sequences: 28952
Number of extensions: 404475
Number of successful extensions: 1071
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2090971320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)