Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D03
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         27   0.17 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   1.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   2.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   4.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.2  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 697 HRKVKCSLLTWLGKW 741
           HR+V C +L+W  KW
Sbjct: 59  HRRVTCDVLSWQSKW 73


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/54 (20%), Positives = 24/54 (44%)
 Frame = +3

Query: 537 TFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLXYVNLLMS 698
           T ++ QGI     E  ++++   T +  WR           F+ +  Y+ +L++
Sbjct: 373 TKLSSQGILGEDVENNSEVSKSRTKESAWRHFAAIIEWLSFFIVIFTYIIILIT 426


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 165 VYNHKGEVLISRV--YRDDIGRNAVDAFRVNVIHARQQVRSPV 287
           V N+ G V    +  Y D+  R A+D F+  + +  ++ RSPV
Sbjct: 297 VNNYMGPVATKAMKGYSDEDLREAIDEFKTPMRNDSERNRSPV 339


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 681 HTXVHQGTARFVCT*CLHGASQSDQLLV 598
           H  +H G     CT C     QS QL++
Sbjct: 166 HMRIHTGERPHKCTVCSKTFIQSGQLVI 193



 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 681 HTXVHQGTARFVCT*CLHGASQSDQLLV 598
           H   H G   +VC  C  G + S QL V
Sbjct: 194 HMRTHTGEKPYVCKACGKGFTCSKQLKV 221


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 212 ISVDSRDQHLAFMVINEQAPDHCG 141
           + V + DQ+ + ++I   +PDH G
Sbjct: 658 VHVTNMDQYNSILMIEHLSPDHNG 681


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -2

Query: 356 LCDCCQPNICTLDMEERCACNVGN 285
           LC CC  + C  +M     C   N
Sbjct: 746 LCHCCDFDACDCEMTCPAGCKCYN 769


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,312
Number of Sequences: 438
Number of extensions: 5063
Number of successful extensions: 21
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)