Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_D03
(849 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 206 1e-53
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 206 1e-53
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 153 1e-37
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 153 2e-37
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 122 4e-28
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 122 4e-28
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun... 91 1e-18
At4g35410.2 68417.m05030 clathrin adaptor complex small chain fa... 44 2e-04
At2g17380.1 68415.m02007 clathrin assembly protein AP19 identica... 42 7e-04
At5g23700.1 68418.m02778 hypothetical protein 30 1.7
At4g20060.1 68417.m02935 expressed protein ; expression support... 29 3.0
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 29 5.2
At2g19790.1 68415.m02312 clathrin adaptor complex small chain fa... 28 9.0
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 206 bits (504), Expect = 1e-53
Identities = 98/213 (46%), Positives = 144/213 (67%), Gaps = 6/213 (2%)
Frame = +3
Query: 141 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 320
P ++ N +G+VLI+R YRDD+G N VDAFR +++ ++ PV I SF ++
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNCPVRQIGGCSFVYM 61
Query: 321 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYF-GKISEENIKNNFVLIYELLDEILD 497
+ +N+++ V N N A F+F+++ + + +SYF G E+ I+NNFVLIYELLDEI+D
Sbjct: 62 RISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMD 121
Query: 498 FGYPQNSDTGVLKTFITQQGIKS--ASKEEQAQI---TSQVTGQIGWRREGIKYRRNELF 662
FGYPQN +LK +ITQ+G++S +SK + + T QVTG +GWRREG+ Y++NE+F
Sbjct: 122 FGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNATLQVTGAVGWRREGLAYKKNEVF 181
Query: 663 LDVLXYVNLLMSPQGQVLSAHVAGKVVMXSYLS 761
LD++ VNLLMS +G VL V GKV+M +LS
Sbjct: 182 LDIVESVNLLMSSKGNVLRCDVTGKVLMKCFLS 214
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 206 bits (504), Expect = 1e-53
Identities = 98/213 (46%), Positives = 144/213 (67%), Gaps = 6/213 (2%)
Frame = +3
Query: 141 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHI 320
P ++ N +G+VLI+R YRDD+G N VDAFR +++ ++ PV I SF ++
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNCPVRQIGGCSFVYM 61
Query: 321 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYF-GKISEENIKNNFVLIYELLDEILD 497
+ +N+++ V N N A F+F+++ + + +SYF G E+ I+NNFVLIYELLDEI+D
Sbjct: 62 RISNVYIVIVVSSNANVACGFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMD 121
Query: 498 FGYPQNSDTGVLKTFITQQGIKS--ASKEEQAQI---TSQVTGQIGWRREGIKYRRNELF 662
FGYPQN +LK +ITQ+G++S +SK + + T QVTG +GWRREG+ Y++NE+F
Sbjct: 122 FGYPQNLSPEILKLYITQEGVRSPFSSKPKDKPVPNATLQVTGAVGWRREGLAYKKNEVF 181
Query: 663 LDVLXYVNLLMSPQGQVLSAHVAGKVVMXSYLS 761
LD++ VNLLMS +G VL V GKV+M +LS
Sbjct: 182 LDIVESVNLLMSSKGNVLRCDVTGKVLMKCFLS 214
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 153 bits (371), Expect = 1e-37
Identities = 74/203 (36%), Positives = 123/203 (60%), Gaps = 2/203 (0%)
Frame = +3
Query: 159 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR--QQVRSPVTNIARTSFFHIKRAN 332
LF+ + KG VL+ R YR D+ + F +I Q PV ++ ++ +N
Sbjct: 8 LFLLDIKGRVLVWRDYRGDVTAAQAERFFTKLIETEGDSQSNDPVAYDNGVTYMFVQHSN 67
Query: 333 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 512
I+L ++QN NAA + FL +++DV + YF ++ EE++++NFV++YELLDE++DFGYPQ
Sbjct: 68 IYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQ 127
Query: 513 NSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLXYVNLL 692
++ +L FI + E + VT + WR EG+K+++NE+FLDV+ VN+L
Sbjct: 128 FTEARILSEFIKTDAYR---MEVTQRPPMAVTNSVSWRSEGLKFKKNEVFLDVIESVNIL 184
Query: 693 MSPQGQVLSAHVAGKVVMXSYLS 761
++ GQ++ + V G + M +YLS
Sbjct: 185 VNSNGQIVRSDVVGALKMRTYLS 207
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 153 bits (370), Expect = 2e-37
Identities = 73/203 (35%), Positives = 123/203 (60%), Gaps = 2/203 (0%)
Frame = +3
Query: 159 LFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHAR--QQVRSPVTNIARTSFFHIKRAN 332
LF+ + KG VL+ R YR D+ + F +I Q PV ++ ++ +N
Sbjct: 8 LFLLDIKGRVLVWRDYRGDVSAAQAERFFTKLIEKEGDSQSNDPVAYDNGVTYMFVQHSN 67
Query: 333 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQ 512
++L ++QN NAA + FL +++DV + YF ++ EE++++NFV++YELLDE++DFGYPQ
Sbjct: 68 VYLMIASRQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQ 127
Query: 513 NSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLXYVNLL 692
++ +L FI + E + VT + WR EGI+Y++NE+FLDV+ VN+L
Sbjct: 128 YTEARILSEFIKTDAYR---MEVTQRPPMAVTNAVSWRSEGIQYKKNEVFLDVIENVNIL 184
Query: 693 MSPQGQVLSAHVAGKVVMXSYLS 761
++ GQ++ + V G + M +YL+
Sbjct: 185 VNSNGQIVRSDVVGALKMRTYLT 207
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 122 bits (293), Expect = 4e-28
Identities = 66/220 (30%), Positives = 120/220 (54%), Gaps = 15/220 (6%)
Frame = +3
Query: 147 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS---PVTNIARTSFFH 317
MI FV + +G+ ++ R YR ++ + + + F V ++ + P+ N+ ++FH
Sbjct: 2 MISQFFVLSQRGDNIVFRDYRAEVPKGSTETFFRKVKFWKEDGNAEAPPIFNVDGVNYFH 61
Query: 318 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILD 497
+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++ + NFVL+YELLDE++D
Sbjct: 62 VKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVID 121
Query: 498 FGYPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKY----------- 644
FGY Q + T VLK++I + I + Q + + Q R G
Sbjct: 122 FGYVQTTSTEVLKSYIFNEPIVVSPARLQPIDPAAIFTQGAKRMPGTAVTKSVVANDPGG 181
Query: 645 -RRNELFLDVLXYVNLLMSPQGQVLSAHVAGKVVMXSYLS 761
RR E+F+D++ +++ S G +L++ + G + M SYLS
Sbjct: 182 RRREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLS 221
>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 380
Score = 122 bits (293), Expect = 4e-28
Identities = 66/220 (30%), Positives = 120/220 (54%), Gaps = 15/220 (6%)
Frame = +3
Query: 147 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS---PVTNIARTSFFH 317
MI FV + +G+ ++ R YR ++ + + + F V ++ + P+ N+ ++FH
Sbjct: 2 MISQFFVLSQRGDNIVFRDYRAEVPKGSTETFFRKVKFWKEDGNAEAPPIFNVDGVNYFH 61
Query: 318 IKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILD 497
+K ++ A T+ NV+ ++V E L +I V++ Y G ++E++ + NFVL+YELLDE++D
Sbjct: 62 VKVVGLYFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVID 121
Query: 498 FGYPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKY----------- 644
FGY Q + T VLK++I + I + Q + + Q R G
Sbjct: 122 FGYVQTTSTEVLKSYIFNEPIVVSPARLQPIDPAAIFTQGAKRMPGTAVTKSVVANDPGG 181
Query: 645 -RRNELFLDVLXYVNLLMSPQGQVLSAHVAGKVVMXSYLS 761
RR E+F+D++ +++ S G +L++ + G + M SYLS
Sbjct: 182 RRREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLS 221
>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 415
Score = 90.6 bits (215), Expect = 1e-18
Identities = 56/215 (26%), Positives = 105/215 (48%), Gaps = 10/215 (4%)
Frame = +3
Query: 147 MIGGLFVYNHKGEVLISRVYRDD-IGRNAVDAFRVNVIHARQQVRS-PVTNIARTSFFHI 320
M+ +F+ + GEV++ + + R+ F I ++ PV F I
Sbjct: 1 MLQCIFLISDSGEVMLEKQLTGHRVDRSICAWFWDQYISQGDSFKALPVIASPTHYLFQI 60
Query: 321 KRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDF 500
R I A ++ + M EFL ++ DV+ Y G ++E+ IK+NF+++YELLDE++D
Sbjct: 61 VRDGITFLACSQVEMPPLMAIEFLCRVADVLSEYLGGLNEDLIKDNFIIVYELLDEMIDN 120
Query: 501 GYPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQ--------IGWRREGIKYRRNE 656
G+P ++ +LK I + S S V+ + WR KY NE
Sbjct: 121 GFPLTTEPSILKEMIAPPNLVSKMLSVVTGNASNVSDTLPSGAGSCVPWRPTDPKYSSNE 180
Query: 657 LFLDVLXYVNLLMSPQGQVLSAHVAGKVVMXSYLS 761
+++D++ ++ +++ G+++ + G+V M S L+
Sbjct: 181 VYVDLVEEMDAIVNRDGELVKCEIYGEVQMNSQLT 215
>At4g35410.2 68417.m05030 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 162
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +3
Query: 327 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 506
A+++ Q N V E + ++++ YFG + E ++ NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 122
Query: 507 PQNSDTGVLKTFIT-QQGIKSASKEEQAQITS 599
Q S + I+ Q + +KEE + I++
Sbjct: 123 LQESSKKTVARIISAQDQLVEVAKEEASSISN 154
>At2g17380.1 68415.m02007 clathrin assembly protein AP19 identical
to clathrin assembly protein AP19 GI:2231698 from
[Arabidopsis thaliana]
Length = 161
Score = 41.5 bits (93), Expect = 7e-04
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +3
Query: 327 ANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGY 506
A+++ + N V E + ++++ YFG + E ++ NF Y +LDE+L G
Sbjct: 63 ASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 122
Query: 507 PQNSDTGVLKTFIT-QQGIKSASKEEQAQITS 599
Q S + I+ Q + +KEE + I++
Sbjct: 123 LQESSKKTVARIISAQDQLVEVAKEEASSISN 154
>At5g23700.1 68418.m02778 hypothetical protein
Length = 572
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -3
Query: 247 TLNASTALRPISSR*TLEINTSPLWL*TN---KPPIIVGEASHSFK 119
++ +S+ RP + + N SPLW+ KPP+I+ HSFK
Sbjct: 118 SVRSSSTGRPSTFSRSSTPNASPLWMPPKASLKPPVIIPPIDHSFK 163
>At4g20060.1 68417.m02935 expressed protein ; expression supported by
MPSS
Length = 1134
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Frame = -2
Query: 497 VQDLIKQL--IDQNKVI-LDVLFRNLAKIRLHHINDLQQELKYHGRVHILLCDCCQPNIC 327
V+DL+++L +D N L++L + H+ Q L+ G+V +LL C C
Sbjct: 844 VEDLVRRLWKVDPNVCEKLNILVNTNESLNCFHLQSRNQVLRVCGKVKMLLSICRDALSC 903
Query: 326 TLDMEER 306
T ++ +
Sbjct: 904 TYGLQNQ 910
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 615 IGWRREGIKYRRNELFLDVLXYVNLLMSPQGQVLSAHVAGKVV 743
+ W + I NE +VL Y+ L+S Q+L A V +V+
Sbjct: 589 VNWTSDDIPQGGNEYMNEVLIYLETLVSTAQQILPAKVLKRVL 631
>At2g19790.1 68415.m02312 clathrin adaptor complex small chain
family protein contains Pfam profile: PF01217 clathrin
adaptor complex small chain
Length = 143
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/114 (16%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Frame = +3
Query: 159 LFVYNHKGEVLISRVYR--DDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRAN 332
+ + N +G+ +++ Y R A++ V AR + + + A+
Sbjct: 6 ILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRRYAS 65
Query: 333 IWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEIL 494
++ + N + EF+ +++ M +FG + E +I + + +L+E++
Sbjct: 66 LFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMV 119
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,972,432
Number of Sequences: 28952
Number of extensions: 372363
Number of successful extensions: 892
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -