Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D01
         (812 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.91 
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   3.7  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.7  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   4.9  
At5g42320.1 68418.m05150 zinc carboxypeptidase family protein co...    28   8.5  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   8.5  
At3g62370.1 68416.m07006 expressed protein                             28   8.5  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    28   8.5  
At1g20160.1 68414.m02521 subtilase family protein similar to sub...    28   8.5  

>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 379 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 233
           LG +H  PA +I+R P PP  +S   +++++F     E    +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 249 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 139
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 519 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 632
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 482 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 366
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At5g42320.1 68418.m05150 zinc carboxypeptidase family protein
           contains Pfam domain, PF00246: Zinc carboxypeptidase
          Length = 461

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = -2

Query: 796 TFPLMGDNPTLGEFCFAMIGRADIEGSKSNVAMNAW 689
           TF + GDN T    CF M    D+   K    +N W
Sbjct: 334 TFEIYGDNQTASRDCFKMFNPVDLPNFKR--VLNDW 367


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 343 DRAPLPPNRVSNETMKVVVFQRRSRET 263
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 467 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 372
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -2

Query: 394 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 257
           S LC LG+  R PAD I+   L   R+    M  +V  R S + I+
Sbjct: 54  SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98


>At1g20160.1 68414.m02521 subtilase family protein similar to
           subtilisin-type protease precursor GI:14150446 from
           [Glycine max]
          Length = 769

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 720 PSMSALPIIAKQNSPSVGLSPIKGNVS 800
           P+ S L +I+  N PS+G+S  KGN S
Sbjct: 654 PADSNLDLISTINYPSIGISGFKGNGS 680


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,349,366
Number of Sequences: 28952
Number of extensions: 398228
Number of successful extensions: 1106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)