Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C24
(985 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 39 0.007
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 38 0.017
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 35 0.12
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 35 0.12
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) 35 0.12
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 35 0.12
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 33 0.47
SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05) 32 0.62
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.62
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 32 0.62
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.82
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 31 1.1
SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) 31 1.9
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 30 2.5
SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92) 30 3.3
SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15) 29 4.4
SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 29 5.8
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 38.7 bits (86), Expect = 0.007
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Frame = +3
Query: 105 MIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDXRLS 269
++ LL Y +D+ P + + + L + LR ++ E + + I ++ W D L
Sbjct: 35 LLKYLLQNYSKDARPVLNVNDPVQLKLGIMLRQVIDLNERDQILTINVWIRQYWKDHLLK 94
Query: 270 WNAXEWGXSTLAGVLGNAXWTPDXVLLXSXATXXR 374
WN ++G + + W PD +L +T R
Sbjct: 95 WNPDDFGGIKSINIAPDRVWKPDVLLYNRASTDLR 129
Score = 32.7 bits (71), Expect = 0.47
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Frame = +3
Query: 105 MIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDXRLS 269
+++ L Y +D+ P D + + L + LR ++ E E + ++ W D L
Sbjct: 453 LLNYLFQNYSKDARPVLNVDDPVQLKLGIMLRQVIDLDEREQILTTNVWIRQYWADHFLQ 512
Query: 270 WNAXEWGXSTLAGVLGNAXWTPDXVL 347
WN ++ + + W PD +L
Sbjct: 513 WNPDDFSGIKSIIIAPDKVWKPDVLL 538
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 37.5 bits (83), Expect = 0.017
Identities = 24/79 (30%), Positives = 35/79 (44%)
Frame = +3
Query: 171 LTLHLRHANIRESESTVRIQADLQMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVLL 350
LTL+ H ++E ++ L+ W D RL+WN E+G + WTPD +L
Sbjct: 22 LTLYDFHTQDEKNE-VIQTFLILEQMWNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVL 80
Query: 351 XSXATXXRGLXRSXARXYI 407
S A L R +I
Sbjct: 81 NS-ANKDMDLREKNIRLFI 98
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 34.7 bits (76), Expect = 0.12
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Frame = +3
Query: 60 IASAAECENATSLSLMIDSLLAT--YD-RDSPPDSKIVVNLTLHLRHANIRE-SESTVRI 227
+ + E AT+LS +I +L YD + P D V +T ++ + E E+ ++
Sbjct: 755 VGFSEERAKATNLSRIIHGVLQNNGYDIKVRPNDGGEPVEVTTEVKIVSFGEFMEAKMKF 814
Query: 228 QADLQMN--WIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVLLXSXATXXRGLXRSXARX 401
D+ W+D R + N T+AG WTPD + + + R + R R
Sbjct: 815 TMDIYFRQWWVDPRFAHNIDR--AFTMAGDAAKFFWTPDTYFVNAKLSSYRYVTRENMRV 872
Query: 402 YI 407
I
Sbjct: 873 MI 874
>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
Length = 123
Score = 34.7 bits (76), Expect = 0.12
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Frame = +3
Query: 81 ENATSLSLMIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIR---ESESTVRIQADLQM 245
++ L L+ D Y+++ P D + V + + + + E + + ++M
Sbjct: 27 QDDNELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGIAYTQVVDLIEKDQVLISNIWVRM 86
Query: 246 NWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVL 347
NW + L WNA E+G + W PD VL
Sbjct: 87 NWNNHLLRWNASEYGGIDKLNISPTLMWLPDIVL 120
>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
Length = 478
Score = 34.7 bits (76), Expect = 0.12
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 243 MNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVL 347
+ W++ LSWNA E+G V + W PD VL
Sbjct: 77 VKWVNPSLSWNASEFGGVNTLHVEPDRLWVPDIVL 111
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 34.7 bits (76), Expect = 0.12
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 237 LQMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVLLXS 356
+ + W + LSWNA E+G + V WTPD +L S
Sbjct: 21 IAVRWTNPDLSWNASEYGGVSQIYVSPKRPWTPDILLYNS 60
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 33.1 bits (72), Expect = 0.36
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +3
Query: 198 IRESESTVRIQADLQMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVL 347
+ E L+M W D L WN ++G T + + WTP ++
Sbjct: 534 VEEKNMVFTTNVRLRMGWKDAFLQWNPADYGGVTQINLEASDIWTPPVII 583
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 32.7 bits (71), Expect = 0.47
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Frame = +3
Query: 117 LLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESESTVRIQADLQMNWIDXRLSWNAX 281
L TY++D P D + V L L L ++ + T+ + ++ W D RL WN
Sbjct: 20 LFRTYNKDVLPKETLDKGVPVRLDLALNQIIDVNKRAQTMTVVIWVRQYWRDPRLRWNVS 79
Query: 282 EWGXSTLAGVLGNAXWTPDXVL 347
+ + + W PD L
Sbjct: 80 AYDGVDNIVIKASRLWLPDITL 101
>SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05)
Length = 191
Score = 32.3 bits (70), Expect = 0.62
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +3
Query: 156 KIVVNLTLHLRHANIRESESTVRIQADLQMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTP 335
K +V LH + A + S S VR+ +++ W + L WN ++G V N W P
Sbjct: 69 KRIVRPVLHPQDA-VNVSFS-VRLNKLVEVKWENPFLVWNESDYGGVHTLHVTFNDVWVP 126
Query: 336 DXVL 347
D VL
Sbjct: 127 DIVL 130
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 32.3 bits (70), Expect = 0.62
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +3
Query: 189 HANIRESESTVRIQADLQMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVL 347
H + + TV L W D L+WN ++G V + W PD VL
Sbjct: 199 HQQLMGAPVTVACFLPLLQKWYDPWLTWNESDFGGMKSIKVDPSCVWVPDIVL 251
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 32.3 bits (70), Expect = 0.62
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 237 LQMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVLLXSXATXXR 374
+++ W D L+WN ++G V N W PD +L +T R
Sbjct: 26 IRLYWKDHLLNWNPEDFGGVKSINVEPNNVWKPDILLYNPASTDLR 71
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 31.9 bits (69), Expect = 0.82
Identities = 26/112 (23%), Positives = 48/112 (42%)
Frame = +3
Query: 12 MSTTYIILLPFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLRH 191
M+ + LLPFL S E+ +++ L Y++++ P V+N + +
Sbjct: 1 MAPLLLSLLPFLFVFPSLSVDHTEDVEHR--LLNDLFKDYNKEARP----VLNKSEAI-- 52
Query: 192 ANIRESESTVRIQADLQMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVL 347
E + + + + W++ L+W+ +G T V N W PD VL
Sbjct: 53 ----EVQFDMAYAQLINLRWVNPFLTWDPKMYGGLTSINVNPNMIWKPDIVL 100
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 31.5 bits (68), Expect = 1.1
Identities = 13/56 (23%), Positives = 23/56 (41%)
Frame = +3
Query: 180 HLRHANIRESESTVRIQADLQMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVL 347
HLR + V + ++ W + L+WN ++G + W PD +L
Sbjct: 106 HLRFDISEQQAQLVTVSVWIRQKWTNPMLAWNTSKYGGIESVNLNPAKVWIPDIIL 161
>SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)
Length = 79
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 216 TVRIQADLQMNWIDXRLSWNAXEW-GXSTLAGVLGNAXWTPDXVLL 350
T+R+Q ++ W D +L W+ ++ G + W PD VLL
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLL 77
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 30.7 bits (66), Expect = 1.9
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 216 TVRIQADLQMNWIDXRLSWNAXEW-GXSTLAGVLGNAXWTPDXVLL 350
T+R+Q ++ W D +L W+ ++ G + W PD VLL
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLL 77
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 30.3 bits (65), Expect = 2.5
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 204 ESESTVRIQADLQMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVL 347
E +++ ++ W + LSWNA E+G + + + W PD L
Sbjct: 104 EKYELLKLSLYVRQIWKNPLLSWNASEYGGISQVNLEPDQLWKPDIYL 151
>SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92)
Length = 88
Score = 29.9 bits (64), Expect = 3.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 249 WIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVL 347
W + L+WN E+G V W PD VL
Sbjct: 53 WYNPLLTWNVTEYGGLKTINVSPTIIWLPDIVL 85
>SB_4912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -3
Query: 221 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 138
HG LG S+S + G+++ D+GVGGGV
Sbjct: 91 HGHLG----SVSMIMGKMNNDYGVGGGV 114
>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
Length = 487
Score = 29.5 bits (63), Expect = 4.4
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -3
Query: 221 HGGLGLTNVSMSQMQGQVDYDFGVGGGV 138
HG LG S+S + G+++ D+GVGGGV
Sbjct: 358 HGHLG----SVSMIMGKMNNDYGVGGGV 381
>SB_50983| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 434
Score = 29.1 bits (62), Expect = 5.8
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 240 QMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVLLXSXATXXRG 377
+ W D L W+ + G T V + W PD VL + RG
Sbjct: 88 RQTWTDAWLKWDPAKHGGITAINVDPSFLWKPDMVLYNNVNDEDRG 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,792,801
Number of Sequences: 59808
Number of extensions: 204653
Number of successful extensions: 543
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2919714245
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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