Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C22
         (891 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    63   2e-12
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    62   8e-12
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    61   1e-11
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    59   5e-11
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    59   5e-11
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    45   9e-07
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    26   0.35 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    24   1.8  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   7.4  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   9.8  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 63.3 bits (147), Expect = 2e-12
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
 Frame = +2

Query: 197 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA- 370
           ++ E    +   A L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101

Query: 371 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 550
           G +     V +NGS  ++      +   M +  +P D Q C  KFGS  ++ +++D V++
Sbjct: 102 GTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 61.7 bits (143), Expect = 8e-12
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
 Frame = +2

Query: 197 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA- 370
           ++ E    +   A L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101

Query: 371 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 550
           G +     V +NGS  ++      +   + +  +P D Q C  KFGS  ++ +++D V++
Sbjct: 102 GTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 60.9 bits (141), Expect = 1e-11
 Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
 Frame = +2

Query: 197 NIRESESTVRIQADLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA- 370
           ++ E    +   A L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFD 101

Query: 371 GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 550
           G +     V + GS  ++      +   M +  +P D Q C  KFGS  ++ +++D V++
Sbjct: 102 GTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 58.8 bits (136), Expect = 5e-11
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
 Frame = +2

Query: 239 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 412
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 413 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 550
             ++      +   M +  +P D Q C  KFGS  ++ +++D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 58.8 bits (136), Expect = 5e-11
 Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
 Frame = +2

Query: 239 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAAATTA-GDYALRARVSNNGS 412
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 413 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVID 550
             ++      +   M +  +P D Q C  KFGS  ++ +++D V++
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGSWTYDGNQLDLVLN 161


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 44.8 bits (101), Expect = 9e-07
 Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
 Frame = +2

Query: 95  SLSLMIDSLLATYDRDSPPD---SKIVVNLTLH-LRHANIRESESTVRIQADLQMNWIDK 262
           ++S ++DS   +YD+   P+     + V +T++ L  +++ E +    +    +  W D 
Sbjct: 40  NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 99

Query: 263 RLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSV 415
           RL++     G  T  V SE    +W PD   +N        ATT+ ++    RV ++GS+
Sbjct: 100 RLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSI 155

Query: 416 SWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 511
           +   RL I+    M L   P D Q C  +  S
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLCHIEIES 187


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 380 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 481
           A+   +  N + SW + ++  + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = -1

Query: 201 MLACLKCRVRLTTILESGGESRSYVARSESIMRDSDVAFSHSAALAIAQ 55
           +++ L C +  T +L S GE+R ++   +     S  + S    + +A+
Sbjct: 228 VVSTLSCYLERTELLRSSGETRLFLTHRKPFHPASTQSLSRWIKMVLAE 276


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 427 LYPG-DGAVIRYTGAESVVPGGGC 359
           LY G DG+VI     E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 279 QGSGAAALGWCPRN 320
           + S A ALGW P N
Sbjct: 153 KASTAQALGWAPTN 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,953
Number of Sequences: 336
Number of extensions: 3687
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)