Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C21
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.51
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.1
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.6
03_02_0111 + 5688649-5688942 29 6.3
10_07_0095 - 12824101-12824463 28 8.3
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 8.3
06_01_1041 - 8174344-8174574 28 8.3
04_04_1553 - 34363848-34366058,34369087-34370451 28 8.3
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.3
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 8.3
01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892 28 8.3
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.51
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -1
Query: 309 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 145
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 362 PPPGTTLSAPVYLITAPSPV*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 514
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +3
Query: 207 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 323
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 222 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 133
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>03_02_0111 + 5688649-5688942
Length = 97
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 290 AAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPV*SAWT 436
AAA P G + + PPP L+ P+Y + AP + SA+T
Sbjct: 35 AAAAATGPHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>10_07_0095 - 12824101-12824463
Length = 120
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 433 PSALYRRRSRY*IHGRGERSPRRWLQPRLAVPRQAS 326
P A + RR +HG+G R PRR L V R S
Sbjct: 5 PGAQHGRRRPQSLHGQGRRRPRRGLAGESTVLRARS 40
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 94 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 249
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>06_01_1041 - 8174344-8174574
Length = 76
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 301 WLVSSE-RLWRPDVVLLNAAATTAGDYALRARVSNNGSVSCIKR 429
WL S E R WR +V AAA A LR R + G SC++R
Sbjct: 17 WLPSLEQRRWRRRLVREAAAAAVA----LRTRSGDGGDGSCVRR 56
>04_04_1553 - 34363848-34366058,34369087-34370451
Length = 1191
Score = 28.3 bits (60), Expect = 8.3
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 265 LSWNAGEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRA-RVSNNGSVSCIKRLDIS 441
+ W + C +W S L R VV L+ + + + R V+ G + C++RLD+S
Sbjct: 521 VGWGPNDTSCCSWTGISCDLGR--VVELDLSNRSLSRNSFRGVAVAQLGRLPCLRRLDLS 578
Query: 442 T 444
T
Sbjct: 579 T 579
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 391 GRGERSPRRWLQPRLAVPRQASTSVPRTP 305
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 336 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 169
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
>01_03_0098 + 12538501-12538527,12538930-12539355,12539470-12539892
Length = 291
Score = 28.3 bits (60), Expect = 8.3
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 292 CSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNNGSVSCIKRLDISTPISMQLDN 468
CS++L R+W +++ + LRA +N S + +D+STP + LDN
Sbjct: 137 CSSFLA---RIWNNTTPIVDTGLSPGYAALLRALCPSNASATATTAIDVSTPAT--LDN 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,153,124
Number of Sequences: 37544
Number of extensions: 500795
Number of successful extensions: 1398
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -