Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C19
(836 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual 85 1e-17
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual 40 3e-04
SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces pombe... 29 0.82
SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 2.5
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 27 3.3
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 3.3
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2... 26 5.8
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 26 7.6
>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 85.0 bits (201), Expect = 1e-17
Identities = 65/242 (26%), Positives = 112/242 (46%), Gaps = 5/242 (2%)
Frame = +3
Query: 81 FLLCLFVSVNTQPVHRRFEYKYSFKPPYLAQKDGSVPFWEYGGNAIASGES-VRLAPSLR 257
FLL +F V + S + PY+ ++ +WEYGG+ + ++ + L ++
Sbjct: 9 FLLGIFGFVLGALAETSHLERLSLEAPYINHGMRNL-WWEYGGSTVIDRKNGIFLTQDVQ 67
Query: 258 SQKGAIWTKQPINFDWWEVDIMFKITGRGR-IGADGLAFWYTTQRGDYTGEVFGSSDKWN 434
+Q+G I T+ P +EV F+I + DGLAF+ +R G VFG +DK+N
Sbjct: 68 NQQGWISTRLPTPSSSFEVLFQFRINSESTSLFGDGLAFFLAAERAK-PGPVFGFTDKFN 126
Query: 435 GLGVIFDSFDNDNKHN-NPYIMAVVNDGTKVFDHKSDGTTQLLSGC-LRDFRNKPFPTRA 608
G G+ D+++N P ++ + DG +D+++DG ++ C + R +
Sbjct: 127 GYGIFIDTYNNHRPGTLFPRVIVMKGDGHTPYDYENDGKANEIASCSALNVRGNDY-NLG 185
Query: 609 KIEYYMNTLTVYFHNGMTNNEQDYELCFRAENVVLPRGRTLRSVRRH-GGLADXHEVIXF 785
K++Y N + F + CF V LP T S H G L++ HE+
Sbjct: 186 KLKYDKNAKKLRFEIAY-QGSSSFIKCFDLNEVELPL-TTFMSFSAHTGDLSESHEIASI 243
Query: 786 LT 791
L+
Sbjct: 244 LS 245
>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 40.3 bits (90), Expect = 3e-04
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
Frame = +3
Query: 195 WEYGGNAIASGESVRLAP--SLRSQKGAIWTKQPINFDWWEVDIMFKITGRGRIGADGLA 368
W++ G+ V L S ++ G++W+ + W++ F + A
Sbjct: 39 WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQVGWQLSTSF-VAHVSENENTFFA 97
Query: 369 FWYTTQRGDYTGEVFGSSDKWNGLGVIFDSFDNDNK 476
WYT+ G G VFG+SDKW+GL +I D K
Sbjct: 98 IWYTSAVGS-EGPVFGASDKWDGL-LISQEIDQTGK 131
>SPCC63.07 |||tRNA guanylyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 29.1 bits (62), Expect = 0.82
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 261 QKGAIWTKQPINFDWWEVDIMFKI 332
+KG+IW ++PI+ +W + D F +
Sbjct: 206 KKGSIWIREPIDQEWHQQDKKFSV 229
>SPCC663.13c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 144
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 160 GGLNEYLYSKRLCTGCVFTLTNRHNKNAHTINLKFKNSIATLP 32
G L +Y Y ++C G V HNK +H I + S+A LP
Sbjct: 42 GPLAQYAYFNQVCVGAVRCKKETHNK-SHKIQIL---SLAVLP 80
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 436 PFHLSDEPNTSPV*SPRCVVYQNA 365
PFHLS+E + + V +PR +V +A
Sbjct: 263 PFHLSEECSNASVAAPRAIVMTSA 286
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/52 (25%), Positives = 21/52 (40%)
Frame = +3
Query: 6 VFSLERVSHGKVAMEFLNFKLIVCAFLLCLFVSVNTQPVHRRFEYKYSFKPP 161
V +E + H + F + +C +L S+N V F S +PP
Sbjct: 1645 VHEMETLKHASPTFKAYQFVVRICHYLTSKVKSINKDQVFNAFSPDVSERPP 1696
>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -3
Query: 435 RSICPTSRTLRRCSRLAVWYTRMPSRQHLFCLC 337
R++ PTS LRR + + + + M + L C C
Sbjct: 212 RTVVPTSEYLRRLTAVRLQFDIMKAETMLLCRC 244
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 636 TVYFHNGMTNNEQDYELCFRAENV 707
+V FH+G NN +D FR EN+
Sbjct: 165 SVMFHSGQLNNVKDICNKFRPENI 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,217
Number of Sequences: 5004
Number of extensions: 74986
Number of successful extensions: 207
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -