Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C19
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0445 - 21316412-21317162,21317253-21317385,21317634-213177... 31 1.1
01_06_0919 - 32993752-32993856,32994383-32994592,32994666-329952... 31 1.5
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 30 2.0
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 30 2.0
04_03_0703 - 18870287-18871351,18871542-18871733 29 4.6
03_04_0118 + 17418558-17419310 29 4.6
11_01_0405 + 3079275-3079622,3079816-3079903,3081411-3081543,308... 29 6.1
05_04_0320 + 20181560-20182063,20182513-20182853,20183159-201838... 29 6.1
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288... 29 6.1
>05_04_0445 -
21316412-21317162,21317253-21317385,21317634-21317721,
21317873-21318238
Length = 445
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = -1
Query: 827 CWCLXLRGXXT--GGEEXDXFVXVGQPPVAADRPKCP-PPGQHHVL 699
CWCL RG T + QPP A P P PP Q ++
Sbjct: 361 CWCLNFRGRVTIASVKNFQLIAAPAQPPAGAPTPSQPAPPEQDKII 406
>01_06_0919 -
32993752-32993856,32994383-32994592,32994666-32995220,
32995705-32995926,32996381-32996511,32997456-32998353,
32998453-32998530,32998612-32998683,32998728-32998763,
32999413-33000353,33000531-33000659,33000751-33000894,
33000994-33001060,33002434-33002502,33003144-33003278
Length = 1263
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 405 EVFGSSDKWNGLGVIFDSFDNDNKHNNPYIMAVVNDGTKVFDHKSDGTTQLLSG-CLRDF 581
E+F + + W+ D H+ +M +N+G + FDH D + +LLS L +
Sbjct: 91 EIFENKENWSNYS------HTDPSHSQMDVMVELNNGGESFDHSEDTSYRLLSNDFLENS 144
Query: 582 RN 587
RN
Sbjct: 145 RN 146
>04_04_0491 -
25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +3
Query: 84 LLCLFVSVNT--QPVHRRFEYKYSFKPPYLAQKDGSVPFWEYGGNAIASGES 233
L L VS N+ +P+ F Y F Y+ +KD V W G A A GES
Sbjct: 420 LPALLVSYNSLQKPLKHCFSYCSLFPKEYVFRKDKLVRLWLAQGFAAADGES 471
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 726 SAPGAAPRSRRGSTARSPARCSSFRCGS-RQLTCSCSILSW 607
SAP A P +T PA+ RC S R + C I+ W
Sbjct: 21 SAPSARPEYHECATCHGPAKTRCSRCKSVRYCSGKCQIIHW 61
>04_03_0703 - 18870287-18871351,18871542-18871733
Length = 418
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 714 AAPRSRRGSTARSPARCSSFRCGSRQLTCS 625
A P S ST+ S ARC CG+R+ T S
Sbjct: 243 AGPPSTGSSTSMSRARCCGSACGTRRSTWS 272
>03_04_0118 + 17418558-17419310
Length = 250
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 394 SPRCVVYQNAKPSAPILPLPVI-LNMISTSHQSKLMGCLVHIAPFWLRSDGARRTLSPDA 218
+P C++ +P I P I +++++ +K M C+++ + F A R L+ +
Sbjct: 133 APDCILMMEVEPKLEITMGPSITVSVLAHRKDTKKMACVINKSTFDYIDSNAARALAYEY 192
Query: 217 IAFPP 203
+ F P
Sbjct: 193 LQFSP 197
>11_01_0405 +
3079275-3079622,3079816-3079903,3081411-3081543,
3081642-3082395
Length = 440
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Frame = -1
Query: 827 CWCLXLRGXXTGGEEXDXFVXVGQPPVAA----DRPKCPPPGQH 708
CWCL RG T + + P A +P PPP +H
Sbjct: 354 CWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPVPPPPPEH 397
>05_04_0320 +
20181560-20182063,20182513-20182853,20183159-20183819,
20183954-20184112
Length = 554
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = -1
Query: 437 TVPFVRRAEHFAGVVASLCGIPECQAVSTYSASAGNLEHDIDLPPVKVNGLFGPYSPLLA 258
TV E +++ C + + + + T NL DI+ V + +F PY+PL+
Sbjct: 179 TVDLKHELEQLLLLISGRCLLGK-EVMGTKFDEVCNLFRDIE-GGVNLMSVFFPYTPLIP 236
Query: 257 SKRRRE 240
S RRR+
Sbjct: 237 SNRRRD 242
>03_02_0936 -
12528336-12528379,12528516-12528602,12528696-12528809,
12528895-12529120,12529200-12529523,12529603-12529773,
12529870-12530100,12530291-12530479,12531176-12531178
Length = 462
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 422 RRAEHFAGVVASLCGIPECQAVSTYSASAGNLEHDIDLPPVKVNGLFGPYSPLLASK 252
R + FAG+ CG V +A AG L+H L +N ++ LASK
Sbjct: 82 RYLDAFAGIATVCCGHCHPDVVGAIAAQAGRLQHSTVL---YLNHAIADFAEALASK 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,039,067
Number of Sequences: 37544
Number of extensions: 573671
Number of successful extensions: 1929
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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