Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C19
         (836 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18398| Best HMM Match : Lectin_leg-like (HMM E-Value=2.8026e-45)   190   9e-49
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   5e-09
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.88 
SB_49826| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.7  
SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)                 29   4.7  
SB_10087| Best HMM Match : VWA (HMM E-Value=4.00001e-40)               29   4.7  
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                29   6.2  
SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.2  
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  
SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)                 28   8.2  
SB_40935| Best HMM Match : LRR_1 (HMM E-Value=0.035)                   28   8.2  

>SB_18398| Best HMM Match : Lectin_leg-like (HMM E-Value=2.8026e-45)
          Length = 414

 Score =  190 bits (464), Expect = 9e-49
 Identities = 80/145 (55%), Positives = 105/145 (72%)
 Frame = +3

Query: 243 APSLRSQKGAIWTKQPINFDWWEVDIMFKITGRGRIGADGLAFWYTTQRGDYTGEVFGSS 422
           A SL SQ G +WT      +WWE+++ F++TGRGR+GADGLA W+T + G+  G VFGSS
Sbjct: 26  AISLPSQIGFMWTANKFTSEWWEIEVSFRVTGRGRVGADGLAIWFTEKPGE-EGPVFGSS 84

Query: 423 DKWNGLGVIFDSFDNDNKHNNPYIMAVVNDGTKVFDHKSDGTTQLLSGCLRDFRNKPFPT 602
           DKW GLGV+ DSFDND + NNP++  +VNDGTK ++H +DG  Q L GCLRDFRN+P P 
Sbjct: 85  DKWTGLGVLCDSFDNDGQQNNPFVSVMVNDGTKNYEHYNDGKNQHLGGCLRDFRNRPHPV 144

Query: 603 RAKIEYYMNTLTVYFHNGMTNNEQD 677
           R ++ YY N LT    +GM+ +EQD
Sbjct: 145 RVRVRYYQNVLTEKSESGMSKDEQD 169


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
 Frame = +3

Query: 468 DNKHNNPYIMAVVNDGTKVFDHKSDGTTQLLSGCLRDFRNKPFPTRAKIEY--YMNTLTV 641
           +N H +PYI A+V +GT  +DH  DGT   + GC   FR     T A I Y      LT+
Sbjct: 34  NNVHEHPYISAMVGNGTLPYDHDRDGTHSQVEGCSAQFRGLTHDTFALIRYSTSQERLTL 93

Query: 642 YFHNGMTNNEQDYELCFRAENVVLPRGRTLRSVRRHGGLADXHEVI 779
                  + + ++  CF    V LP G         G LAD H++I
Sbjct: 94  LVD---VDGKNEWRECFDVGGVKLPTGLYWGVSAATGQLADNHDII 136



 Score = 33.9 bits (74), Expect = 0.16
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 183 SVPFWEYGGNAIASGESVRLAPSLRSQKGAIW 278
           ++P W++ G+   S   +RL P  +S++G++W
Sbjct: 2   TIPNWDFHGSTFVSSNYIRLTPDHQSKQGSLW 33


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 31.5 bits (68), Expect = 0.88
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = -1

Query: 368 CQAVSTYSASAGN--LEHDIDLP-PVKVNGLFGPYSPLLASKRRRETDALP*CYCVSTIL 198
           C+++S  +AS G   L+ D   P PV+   L  P SPL + +  ++ D +   Y    + 
Sbjct: 507 CRSISDSAASCGMDILQSDTPRPQPVRKRALEAPVSPLPSKEELQQADKMAKEYSERNLR 566

Query: 197 PKRHR 183
           P R R
Sbjct: 567 PSRKR 571


>SB_49826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = +3

Query: 345 RIGADGLAFWYTTQRGDYTGEVFGSSDKWNGLGVIFDSFDNDNKHNNPYIMAVVND--GT 518
           R+  DGL +   + +G Y   +  +S  ++G+  +   F +D K+   Y M+        
Sbjct: 62  RVDRDGLIWTNASSQGKYPRYIVSTSWPYHGVQPVSQGFASDQKYQGIYPMSTHQGLASD 121

Query: 519 KVFDHKSDGTTQLLSGC 569
           K F H ++    ++  C
Sbjct: 122 KRFSHINNTLPNVMQKC 138


>SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)
          Length = 354

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -2

Query: 472 LSLSKESNMTPRPFHLSDEPNTSPV*SPRCVVYQNAKPSAPILPLPVILNMISTSHQSKL 293
           + LS E       FH+   P+     +    +Y N+KP        +ILNM  +     L
Sbjct: 9   VGLSYEGKTAISAFHVL--PSLLSTVANVLTIYVNSKPRMRTTTNILILNMAVSDVIVTL 66

Query: 292 MGCLVHIAPFW 260
           +GC + +A FW
Sbjct: 67  IGCPITVAWFW 77


>SB_10087| Best HMM Match : VWA (HMM E-Value=4.00001e-40)
          Length = 357

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 540 DGTTQLLS--GCLRDFRNKPFPTRAKIEYYMN 629
           DGT Q+L   GC +D   KPFP RA  + Y N
Sbjct: 34  DGTKQILKKIGCYKD---KPFPNRALRDLYHN 62


>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1155

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 404 AGVVASLCGIPECQAVSTYSASAGNLEHDI 315
           AGV  S CG+PE Q +  Y    G  EH++
Sbjct: 283 AGVPESPCGLPEIQQIQRYLGERG-FEHNV 311


>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 358 TAWHSGIPHSEATTPAKCSARRTNGTV 438
           T +HSG   +  T PA+CS+ R NG V
Sbjct: 593 TEFHSGESGASDTYPAQCSSLRKNGHV 619


>SB_8479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 723 APGAAPRSRRGSTARSPARCSSFRCGSR 640
           +P + PRSR GS  R+P   +S R  SR
Sbjct: 344 SPTSTPRSRTGSRTRTPPTPTSSRASSR 371


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 423 DKWNGLGVIFDSFDNDNKHNNPYIMAVVNDGTKVFDHKSDGTTQLLSG 566
           D ++G+  + DS D+D+   +  I+  VND   VF      T ++  G
Sbjct: 30  DHYDGVDDVDDSDDDDDDDEDDIILDDVNDNAPVFSRPEGYTFEVQEG 77


>SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)
          Length = 354

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 379 VYQNAKPSAPILPLPVILNMISTSHQSKLMGCLVHIAPFW 260
           +Y N+KP        +ILNM        L+GC + +A FW
Sbjct: 38  IYVNSKPRMRTTTNILILNMAVGDVTVTLIGCPITVAWFW 77


>SB_40935| Best HMM Match : LRR_1 (HMM E-Value=0.035)
          Length = 428

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 432 SICPTSRTLRRCSRLAVWYTRMPSRQHLFCLC 337
           ++C      R   R+  + ++ P RQ L+CLC
Sbjct: 133 NLCQKRDKFREMVRIKCYCSKQPYRQRLYCLC 164


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,937,306
Number of Sequences: 59808
Number of extensions: 623654
Number of successful extensions: 1828
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1824
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)