Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C19
         (836 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g44130.1 68414.m05097 nucellin protein, putative similar to n...    30   1.7  
At1g11880.1 68414.m01370 expressed protein contains Pfam profile...    29   3.8  
At5g63420.1 68418.m07962 metallo-beta-lactamase family protein         29   5.1  
At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger) fa...    29   5.1  

>At1g44130.1 68414.m05097 nucellin protein, putative similar to
           nucellin GI:2290202 from [Hordeum vulgare]
          Length = 405

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
 Frame = +3

Query: 375 YTTQRGDYTGEVFGSSDKWNGLGVIFDSFDNDNKHNNPYIMAVVN---DGTKVFDHKSDG 545
           YTT   D      G      GL +IFD+  +    N+     ++N   +  KV   K   
Sbjct: 241 YTTGPADLLFN--GKPTGLKGLKLIFDTGSSYTYFNSKAYQTIINLIGNDLKVSPLKVAK 298

Query: 546 TTQLLSGCLRDFRNKPFPTRAKIEYYMNTLTVYFHNGMTNNE 671
             + L  C +    KPF +  +++ +  T+T+ F NG  N +
Sbjct: 299 EDKTLPICWKGA--KPFKSVLEVKNFFKTITINFTNGRRNTQ 338


>At1g11880.1 68414.m01370 expressed protein contains Pfam profile
           PF04188: Protein of unknown function (DUF409)
          Length = 489

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 27  SHGKVAMEFLNFKLIVCAFLLCLFVSVNTQPVHRRFEYKYSFKPPYLAQKDGSVPF 194
           S+ K   E +  K  + + LL LF+++  + + + ++   +  PP L  K+ S PF
Sbjct: 7   SNSKSRKETILIKYAIFSRLLVLFLTILWRSLLQPYDTSAALNPPCLYHKEDSFPF 62


>At5g63420.1 68418.m07962 metallo-beta-lactamase family protein 
          Length = 911

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = -3

Query: 735 TEVSAPGAAPRSRRGSTARSPARCS-SFRCGSR-QLTCSCSILSWPGSGTACS*SRADIR 562
           ++V  P   P      +A S    + +FR  SR + T SCS+ S P SGT+ S      R
Sbjct: 20  SDVRRPATTPSKMAAFSALSLCPYTFTFRQSSRIKSTVSCSVTSAPASGTSSSSKTPRRR 79

Query: 561 TG 556
           +G
Sbjct: 80  SG 81


>At1g73760.1 68414.m08540 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 367

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 685 CASAPRTWCCPGGGHFGLSAATGG 756
           CA+ P  WC PG G F   A  GG
Sbjct: 138 CAAIPDVWCGPGVG-FSTDAVVGG 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,308,371
Number of Sequences: 28952
Number of extensions: 418931
Number of successful extensions: 1223
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)