Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C18
         (916 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    40   2e-05
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    40   2e-05
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    38   1e-04
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    36   3e-04
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    36   3e-04
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.82 

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = +3

Query: 162 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 338
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 339 ERLWRPDVVLL-XAGAXTAGDYALRARVSNNGSVSWI 446
            +LW+PDV++   A     G +     V +NGS  ++
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYV 119


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 40.3 bits (90), Expect = 2e-05
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
 Frame = +3

Query: 162 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 338
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 339 ERLWRPDVVLL-XAGAXTAGDYALRARVSNNGSVSWI 446
            +LW+PDV++   A     G +     V +NGS  ++
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYV 119


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 37.9 bits (84), Expect = 1e-04
 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
 Frame = +3

Query: 162 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 338
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 339 ERLWRPDVVLL-XAGAXTAGDYALRARVSNNGSVSWI 446
            +LW+PDV++   A     G +     V + GS  ++
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYV 119


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 261 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-XAGAXTAGDYALRARVSNNGS 434
           L + W D  L WN  E+ G     ++  +LW+PDV++   A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 435 VSWI 446
             ++
Sbjct: 116 CLYV 119


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 36.3 bits (80), Expect = 3e-04
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 261 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-XAGAXTAGDYALRARVSNNGS 434
           L + W D  L WN  E+ G     ++  +LW+PDV++   A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 435 VSWI 446
             ++
Sbjct: 116 CLYV 119


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = -1

Query: 241 VDSDSRMLACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNG 62
           V S+S       CR     I +    ++  V+    + +DS  AF+      +AQV    
Sbjct: 56  VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTN 115

Query: 61  NKNNISRRHFMTT 23
           N  N + R   TT
Sbjct: 116 NGTNKNMRRLSTT 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,652
Number of Sequences: 336
Number of extensions: 2294
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25547951
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)