Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C18
(916 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 32 0.55
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 30 2.2
12_01_0424 - 3346402-3346875 29 3.9
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 29 3.9
09_04_0031 + 13946692-13946774,13947007-13948012 29 6.8
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 29 6.8
09_04_0028 - 13928542-13929538,13929736-13929818 28 9.0
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 9.0
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 28 9.0
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 32.3 bits (70), Expect = 0.55
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 332 HQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQM-QGQVDYDFGVGG 168
H P AAA P VP++ P L + GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 30.3 bits (65), Expect = 2.2
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 230 VRVHRADTGRSSNELDRQTTELERRGMGLQHLAGVLGTL 346
V+ H + R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>12_01_0424 - 3346402-3346875
Length = 157
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 482 AGLDXWPXEXADLXGSLRVRGWP 550
AG+D WP AD+ + V GWP
Sbjct: 46 AGVDGWPKAPADVAPNAGVDGWP 68
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 29.5 bits (63), Expect = 3.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 245 HGGLGLTNVSMSQMQGQVDYDFGVGGRLPI 156
+GG L ++Q G Y +G GGRLP+
Sbjct: 100 YGGPALPRYGIAQFPGGSGYPYGYGGRLPM 129
>09_04_0031 + 13946692-13946774,13947007-13948012
Length = 362
Score = 28.7 bits (61), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 307 NGAAALGWCPRNACGGLTWYCXTR 378
NG AALGW R+ G L+ + TR
Sbjct: 4 NGTAALGWAARDTSGHLSPFSFTR 27
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.7 bits (61), Expect = 6.8
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 411 RGERSPRRXXHPRXAVPRQASTSVPRTPAKCCSPIPLRSNSVVCRSNSFEDLPVSA 244
R RSPRR P R + + R+PA S P+R++S + D+ +A
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADSRSPADHERRDMSTAA 279
>09_04_0028 - 13928542-13929538,13929736-13929818
Length = 359
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 307 NGAAALGWCPRNACGGLTWYCXTR 378
+G AALGW R+A G L+ + TR
Sbjct: 4 DGTAALGWAARDASGHLSPFSFTR 27
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 117 SLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMN 272
+L +D L+ YD+ PPDS+ V HA + +R+L + +N
Sbjct: 160 NLWTQVDILILRYDK--PPDSRFVQEALAAHAHATEGSETTAIRLLEVISLN 209
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -3
Query: 359 VRPPQAFRGHQPSAAAPFPCVPTQSFVDPIHLKICQYPHGGLGLTNVSMSQMQGQV 192
++PP H + AP P +P+ S P++ + PH S +QM Q+
Sbjct: 551 LQPPAHMLPHAQGSRAPLPQLPSMSGPPPVNPPLPPMPHPMAMQVQGSSNQMMPQM 606
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,982,816
Number of Sequences: 37544
Number of extensions: 330468
Number of successful extensions: 979
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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