Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C18
(916 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24) 41 0.002
SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24) 40 0.002
SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41) 40 0.004
SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 40 0.004
SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.015
SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24) 37 0.020
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.026
SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002) 36 0.035
SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 36 0.046
SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3) 36 0.060
SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 33 0.24
SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08) 33 0.24
SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.43
SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0) 31 1.3
SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92) 31 1.3
SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0) 31 1.7
SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05) 30 3.0
SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8) 28 9.2
>SB_51056| Best HMM Match : Neur_chan_LBD (HMM E-Value=4.3e-24)
Length = 373
Score = 40.7 bits (91), Expect = 0.002
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Frame = +3
Query: 141 LLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 305
L TY+++ P D + V L L L ++ + T+ ++ ++ W D RL WN
Sbjct: 20 LFRTYNKDVLPKETLDKGVPVRLDLALNQIIDVNKRAQTMTVVIWVRQYWRDPRLRWNVS 79
Query: 306 EW-GCSTWLVSSERLWRPDVVL 368
+ G ++ + RLW PD+ L
Sbjct: 80 AYDGVDNIVIKASRLWLPDITL 101
>SB_38490| Best HMM Match : Neur_chan_LBD (HMM E-Value=2e-24)
Length = 478
Score = 40.3 bits (90), Expect = 0.002
Identities = 17/35 (48%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +3
Query: 267 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 368
+ W++ LSWNA E+ G +T V +RLW PD+VL
Sbjct: 77 VKWVNPSLSWNASEFGGVNTLHVEPDRLWVPDIVL 111
>SB_52663| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.50006e-41)
Length = 342
Score = 39.5 bits (88), Expect = 0.004
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Frame = +3
Query: 195 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL 371
LTL+ H ++E ++ L+ W D RL+WN E+ G + S+ +W PD+ +L
Sbjct: 22 LTLYDFHTQDEKNE-VIQTFLILEQMWNDTRLAWNETEYGGIKQMTLRSKLIWTPDISVL 80
Query: 372 XAGAXTAG--DYALRARVSNNGSVSWIXAL 455
+ + +R +++ G V W+ L
Sbjct: 81 NSANKDMDLREKNIRLFINSAGEVLWMNPL 110
>SB_31671| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 541
Score = 39.5 bits (88), Expect = 0.004
Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 12/118 (10%)
Frame = +3
Query: 129 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 293
++ LL Y +++ P + + + L + LR ++ E + + I ++ W D L
Sbjct: 35 LLKYLLQNYSKDARPVLNVNDPVQLKLGIMLRQVIDLNERDQILTINVWIRQYWKDHLLK 94
Query: 294 WNAGEWG-CSTWLVSSERLWRPDVVLLXAGAXTAGDYALRARVSNN------GSVSWI 446
WN ++G + ++ +R+W+PDV+L + +L ++ N GS +W+
Sbjct: 95 WNPDDFGGIKSINIAPDRVWKPDVLLYNRASTDLRFGSLNNKIDTNVIVNHDGSTTWL 152
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Frame = +3
Query: 129 MIDSLLATYDRESPP----DSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 293
+++ L Y +++ P D + + L + LR ++ E E + ++ W D L
Sbjct: 453 LLNYLFQNYSKDARPVLNVDDPVQLKLGIMLRQVIDLDEREQILTTNVWIRQYWADHFLQ 512
Query: 294 WNAGEW-GCSTWLVSSERLWRPDVVL 368
WN ++ G + +++ +++W+PDV+L
Sbjct: 513 WNPDDFSGIKSIIIAPDKVWKPDVLL 538
>SB_59159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 686
Score = 37.5 bits (83), Expect = 0.015
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Frame = +3
Query: 213 HANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLL-XAGAX 386
H + + TV L W D L+WN ++ G + V +W PD+VL +
Sbjct: 199 HQQLMGAPVTVACFLPLLQKWYDPWLTWNESDFGGMKSIKVDPSCVWVPDIVLYNNVDSD 258
Query: 387 TAGD---YALRARVSNNGSVSWI 446
++G+ + + + ++G+V W+
Sbjct: 259 SSGEMYKFTTKVNIHSDGTVQWL 281
>SB_38489| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.1e-24)
Length = 445
Score = 37.1 bits (82), Expect = 0.020
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +3
Query: 246 RILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 368
+++ + + W + LSWNA E+ G S VS +R W PD++L
Sbjct: 16 KLIRIIAVRWTNPDLSWNASEYGGVSQIYVSPKRPWTPDILL 57
>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 724
Score = 36.7 bits (81), Expect = 0.026
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Frame = +3
Query: 240 TVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLLXAGAXTAGDYALR- 410
T+R+ ++ W D +L W+ ++G +V ER +W PDVVLL ++ +
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLLNNAEKSSMGKPVNE 91
Query: 411 ---ARVSNNGSVSWI 446
V +NG V W+
Sbjct: 92 GNPVLVESNGVVRWL 106
>SB_43224| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.002)
Length = 123
Score = 36.3 bits (80), Expect = 0.035
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Frame = +3
Query: 105 ENATSLSLMIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILAD---LQM 269
++ L L+ D Y++ P D + V + + + + + ++L ++M
Sbjct: 27 QDDNELRLIKDLFFRGYNKNVRPVEDKSMPVEVKFGIAYTQVVDLIEKDQVLISNIWVRM 86
Query: 270 NWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVL 368
NW + L WNA E+G L +S +W PD+VL
Sbjct: 87 NWNNHLLRWNASEYGGIDKLNISPTLMWLPDIVL 120
>SB_49329| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 716
Score = 35.9 bits (79), Expect = 0.046
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Frame = +3
Query: 273 WIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLXAGAXTAGD---YALRA--RVSNNGS 434
W + LSWNA E+ G S + ++LW+PD+ L A ++ D Y +A +VS+ G
Sbjct: 119 WKNPLLSWNASEYGGISQVNLEPDQLWKPDIYLYN-NADSSADGSLYGFKAKIKVSHTGL 177
Query: 435 VSWI 446
W+
Sbjct: 178 NMWL 181
>SB_37177| Best HMM Match : Neur_chan_LBD (HMM E-Value=5.3)
Length = 79
Score = 35.5 bits (78), Expect = 0.060
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 240 TVRILADLQMNWIDKRLSWNAGEWGCSTWLVSSER--LWRPDVVLL 371
T+R+ ++ W D +L W+ ++G +V ER +W PDVVLL
Sbjct: 32 TIRLQQIYELAWWDHKLQWDQSKYGGIKEVVLPERGVIWVPDVVLL 77
>SB_24418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 34.3 bits (75), Expect = 0.14
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +3
Query: 261 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-XAGAXTAG---DYALRARVSN 425
+ + W++ L+W+ +G T + V+ +W+PD+VL G G + RA + +
Sbjct: 64 INLRWVNPFLTWDPKMYGGLTSINVNPNMIWKPDIVLYHNIGFGETGAIYKFDTRATIMH 123
Query: 426 NGSVSW 443
NG W
Sbjct: 124 NGYTEW 129
>SB_37593| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 548
Score = 33.5 bits (73), Expect = 0.24
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +3
Query: 204 HLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLXAG 380
HLR + V + ++ W + L+WN ++ G + ++ ++W PD++L
Sbjct: 106 HLRFDISEQQAQLVTVSVWIRQKWTNPMLAWNTSKYGGIESVNLNPAKVWIPDIILYNNA 165
Query: 381 AXT-AG---DYALRARVSNNGSVSW 443
T AG Y S++G+ W
Sbjct: 166 DETYAGGLEKYKTSVIASSDGTQEW 190
>SB_453| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.1e-08)
Length = 362
Score = 33.5 bits (73), Expect = 0.24
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 261 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 368
+ + W D RL WN ++ G +++ S +LW PD+ L
Sbjct: 276 IDLYWTDFRLRWNHTKYGGIKSFVTPSRQLWLPDITL 312
>SB_73| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 930
Score = 32.7 bits (71), Expect = 0.43
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +3
Query: 261 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL----XAGAXTAGDYALRARVSN 425
L+M W D L WN ++G T + + + +W P V++ G R V +
Sbjct: 547 LRMGWKDAFLQWNPADYGGVTQINLEASDIWTPPVIIYNQAGDLGESITSSNTPRPVVRS 606
Query: 426 NGSVSWI 446
+G+V W+
Sbjct: 607 DGTVLWM 613
>SB_31676| Best HMM Match : Neur_chan_LBD (HMM E-Value=0)
Length = 422
Score = 31.1 bits (67), Expect = 1.3
Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +3
Query: 261 LQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLXAGAXTAGDYALRARV------ 419
+++ W D L+WN ++ G + V +W+PD++L + +L ++
Sbjct: 26 IRLYWKDHLLNWNPEDFGGVKSINVEPNNVWKPDILLYNPASTDLRVESLYKKIDTKVIL 85
Query: 420 SNNGSVSWI 446
S++GS +W+
Sbjct: 86 SSDGSAAWL 94
>SB_4972| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.92)
Length = 88
Score = 31.1 bits (67), Expect = 1.3
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Frame = +3
Query: 129 MIDSLLATYDRESPP--DSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 302
+++ LL YDR P + V +TL L T+ + D+ W + L+WN
Sbjct: 15 LLEKLLTGYDRNERPVLNDNESVTVTLGL----------TLNQIVDVI--WYNPLLTWNV 62
Query: 303 GEWG-CSTWLVSSERLWRPDVVL 368
E+G T VS +W PD+VL
Sbjct: 63 TEYGGLKTINVSPTIIWLPDIVL 85
>SB_53420| Best HMM Match : Hist_deacetyl (HMM E-Value=0)
Length = 360
Score = 30.7 bits (66), Expect = 1.7
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 321 TWLVSSERLWRPDVVLLXAGAXTAGDYAL-RARVSNNG 431
TWL+ +WRPD+VL AG D L R ++++NG
Sbjct: 272 TWLLD---MWRPDIVLYDAGVDPHVDDVLGRLKLTDNG 306
>SB_37942| Best HMM Match : Neur_chan_LBD (HMM E-Value=7.7e-05)
Length = 191
Score = 29.9 bits (64), Expect = 3.0
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 180 KIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRP 356
K +V LH + A + S S VR+ +++ W + L WN ++ G T V+ +W P
Sbjct: 69 KRIVRPVLHPQDA-VNVSFS-VRLNKLVEVKWENPFLVWNESDYGGVHTLHVTFNDVWVP 126
Query: 357 DVVL 368
D+VL
Sbjct: 127 DIVL 130
>SB_46592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 29.5 bits (63), Expect = 4.0
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Frame = +3
Query: 273 WIDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLXAG---AXTAGDYAL---RARVSNNGS 434
W D L W+ ++ S + +W PDV L+ G AG L V +G
Sbjct: 404 WKDPSLQWDKAKYNLHKTRFSPKEIWVPDVSLINNGDKLVHVAGGAELFNADTVVRQSGK 463
Query: 435 VSWI 446
V WI
Sbjct: 464 VDWI 467
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 29.5 bits (63), Expect = 4.0
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Frame = +3
Query: 261 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLL-XAGAXTAG---DYALRARVSN 425
+ + W + L+W+ +G T + V R+WRPD++L A T G + + ++
Sbjct: 75 IDLKWNNPLLTWDPTHFGNLTSINVDPLRVWRPDLILYNNADRDTDGALDRFYTKVQLKF 134
Query: 426 NGSVSWI 446
+GS W+
Sbjct: 135 DGSSLWL 141
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 230 LTNVSMSQMQGQVDYDFGVGGRLPIVRCEERVDHE 126
L+++S +G VD FGV + +R +++D+E
Sbjct: 594 LSHISGGDKEGDVDLHFGVNSQTGAIRLNKKLDYE 628
>SB_14827| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.8)
Length = 156
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 273 WIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVL 368
W ++ L+W+ E+G ST V+ +++W PD+ L
Sbjct: 2 WRNEYLTWDPKEFGGISTINVNVDKVWVPDIYL 34
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,000,605
Number of Sequences: 59808
Number of extensions: 332084
Number of successful extensions: 896
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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