Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C17
(887 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori... 64 3e-09
UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera... 44 0.004
UniRef50_Q02362 Cluster: Trans-acting transcriptional activator ... 36 1.4
UniRef50_UPI00015A4D26 Cluster: Novel proein similar to vertebra... 36 1.8
UniRef50_UPI0000DA1B2E Cluster: PREDICTED: hypothetical protein;... 35 2.4
UniRef50_Q4RJU6 Cluster: Chromosome 9 SCAF15033, whole genome sh... 35 2.4
UniRef50_A6GKA1 Cluster: Putative regulatory protein; n=1; Plesi... 35 2.4
UniRef50_Q8S5G6 Cluster: Putativedisease resistance protein; n=3... 35 3.2
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|... 35 3.2
UniRef50_Q00VF3 Cluster: Homology to unknown gene; n=2; Ostreoco... 34 4.2
UniRef50_A0BDG5 Cluster: Chromosome undetermined scaffold_100, w... 34 4.2
UniRef50_Q8MXK9 Cluster: Putative uncharacterized protein; n=3; ... 34 5.6
UniRef50_Q22002 Cluster: Putative uncharacterized protein mab-10... 34 5.6
UniRef50_Q7S4U0 Cluster: Predicted protein; n=1; Neurospora cras... 34 5.6
UniRef50_Q4P4G4 Cluster: Putative uncharacterized protein; n=1; ... 34 5.6
UniRef50_Q9ERH4 Cluster: Nucleolar and spindle-associated protei... 34 5.6
UniRef50_Q80TN7 Cluster: Neuron navigator 3; n=38; Euteleostomi|... 34 5.6
UniRef50_Q8IVL0 Cluster: Neuron navigator 3; n=36; cellular orga... 34 5.6
UniRef50_Q0UD82 Cluster: Putative uncharacterized protein; n=1; ... 33 7.4
UniRef50_Q497S4 Cluster: Troap protein; n=8; Murinae|Rep: Troap ... 33 9.7
UniRef50_Q8XQ72 Cluster: Putative uncharacterized protein; n=1; ... 33 9.7
UniRef50_Q88RX4 Cluster: Putative uncharacterized protein lp_368... 33 9.7
UniRef50_A6UXC2 Cluster: Lipoprotein, putative; n=5; Pseudomonas... 33 9.7
UniRef50_A5V7S9 Cluster: TonB-dependent receptor, plug precursor... 33 9.7
UniRef50_A2QUZ5 Cluster: Contig An10c0020, complete genome. prec... 33 9.7
>UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori|Rep:
Reverse transcriptase - Bombyx mori (Silk moth)
Length = 1076
Score = 64.5 bits (150), Expect = 3e-09
Identities = 31/51 (60%), Positives = 37/51 (72%)
Frame = +2
Query: 425 RQSVLEAWSRRLADPSAGLRTVEAICPVLADWVGRDRGSLTSGYLCRLTRH 577
R+SVLE+WSRRLA+P+ GLRTVEA+ PV DWV R G LT + LT H
Sbjct: 909 RRSVLESWSRRLANPTWGLRTVEAVYPVFDDWVNRGEGRLTFRLVQVLTGH 959
>UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera|Rep:
Reverse transcriptase - Papilio xuthus
Length = 1053
Score = 44.4 bits (100), Expect = 0.004
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 425 RQSVLEAWSRRLADPSAGLRTVEAICPVLADWVGRDRGSLT 547
R+ + W RRL AG RT+ AICPV W+ R G++T
Sbjct: 886 REEAVSKWQRRLRQTRAGARTIGAICPVFMAWLRRRHGAVT 926
>UniRef50_Q02362 Cluster: Trans-acting transcriptional activator
protein ICP4; n=15; Alphaherpesvirinae|Rep: Trans-acting
transcriptional activator protein ICP4 - Gallid
herpesvirus 2 (strain GA) (GaHV-2) (Marek's disease
herpesvirustype 1)
Length = 1415
Score = 35.9 bits (79), Expect = 1.4
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +3
Query: 174 PLPHPSNRNTPLLHGRNRQGDGT-RAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELF 350
P PSN + + RN + T R V + PS ++S + +SP + S
Sbjct: 125 PETSPSNEHIIISPPRNPPSNTTHRNVGHVSRSPSSSSSSSSSSSPSSSSLIVLSSPSSS 184
Query: 351 NDTSQSPTRRRALAQVQPERG-GSNIG 428
S SP R RA + +P RG GSN G
Sbjct: 185 RSPSPSPPRPRADSSSRPRRGRGSNRG 211
>UniRef50_UPI00015A4D26 Cluster: Novel proein similar to vertebrate
synaptosomal-associated protein (SNAP91); n=3; Danio
rerio|Rep: Novel proein similar to vertebrate
synaptosomal-associated protein (SNAP91) - Danio rerio
Length = 856
Score = 35.5 bits (78), Expect = 1.8
Identities = 23/76 (30%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Frame = +3
Query: 228 QGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSA--RSQSELFNDTSQSPTRRRALAQVQ 401
QG T V T+ ++PT PR DA A + L + S + A
Sbjct: 302 QGSPTNNVSPTSTPAKSGAAVPTLEPPRADAAPAAETATDSLLDLDPLSSSGPSGGASAA 361
Query: 402 PERGGSNIGSPCWRRG 449
P G +GS CW RG
Sbjct: 362 PTSWGDLLGSACWGRG 377
>UniRef50_UPI0000DA1B2E Cluster: PREDICTED: hypothetical protein;
n=1; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 232
Score = 35.1 bits (77), Expect = 2.4
Identities = 32/91 (35%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Frame = +3
Query: 183 HPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTS 362
HP P +G+GT A GT S A SL +RT R A R EL
Sbjct: 43 HPEPCQPPPGRTFPSRGEGTPAELGTKRPASAALSLRSRTLVRARASVVRI-VELCASRR 101
Query: 363 QSPTRRRALAQVQPERGG--SNIGSPCWRRG 449
QS RR ERG S + PC R G
Sbjct: 102 QSSARRPKSRSFPGERGSPKSAVLGPCRRSG 132
>UniRef50_Q4RJU6 Cluster: Chromosome 9 SCAF15033, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 9
SCAF15033, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 294
Score = 35.1 bits (77), Expect = 2.4
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Frame = +3
Query: 135 P*DRSSKVSV*LQPLPHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGATSLPTRT-SPR 311
P D S V L+P N + GR RQGD +EH GA + T SP
Sbjct: 44 PADTLSVPIVNLEPPTEGENNSEDERGGRERQGDSGGGNKPDSEHDVGANCVATEVLSPE 103
Query: 312 CDAGSARSQSELFNDTSQSPTRRRALAQVQPERGGSNIGSPCWRRGLVVW 461
+GS S+ N S++ +R + + N+ SP R+ W
Sbjct: 104 ISSGSCTRVSDSQN-KSKTVEDKRKTSPYFTRKLSKNVLSPPRRKVFKKW 152
>UniRef50_A6GKA1 Cluster: Putative regulatory protein; n=1;
Plesiocystis pacifica SIR-1|Rep: Putative regulatory
protein - Plesiocystis pacifica SIR-1
Length = 929
Score = 35.1 bits (77), Expect = 2.4
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 544 ETSAVAAHPVRENRADRLDGTEAGRRVRQTTRPRLQHGLPILEPPRSGCTCAR-ARRLVG 368
E AVA VR+ R L AG+R R + R L+H LPILE R R A +L+
Sbjct: 869 EHVAVAETEVRKARL-LLAARPAGQRSRDSARKLLEHALPILERERPNSDTIRLAAKLLK 927
Query: 367 DC 362
+C
Sbjct: 928 NC 929
>UniRef50_Q8S5G6 Cluster: Putativedisease resistance protein; n=3;
Oryza sativa (japonica cultivar-group)|Rep:
Putativedisease resistance protein - Oryza sativa subsp.
japonica (Rice)
Length = 648
Score = 34.7 bits (76), Expect = 3.2
Identities = 29/96 (30%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Frame = +3
Query: 180 PHPSNRNTP---LLHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELF 350
P N+P LLHG G+ +A G G +L AG+AR +
Sbjct: 62 PGQQESNSPGKELLHG---SGNSFQATGGD----EGGGALTDERGAASAAGAARRATGES 114
Query: 351 NDTSQSPTRRRALAQVQPERGGSNIGSPCWRRGLVV 458
SPTR A A R G G W RG V
Sbjct: 115 GSVGSSPTRETASAARMESRQGGRDGGAAWHRGCAV 150
>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
Length = 191
Score = 34.7 bits (76), Expect = 3.2
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +2
Query: 56 VDELTAHLXVKWLLEPIDIHSVNAPHTLR*KF 151
VDELTAHL + P ++ VNAP T R KF
Sbjct: 160 VDELTAHLVLSGYWSPRHLYDVNAPPTSRYKF 191
>UniRef50_Q00VF3 Cluster: Homology to unknown gene; n=2;
Ostreococcus|Rep: Homology to unknown gene -
Ostreococcus tauri
Length = 680
Score = 34.3 bits (75), Expect = 4.2
Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +3
Query: 618 SHHANYNFTGSTSLTRCYS-HTEGSQPRTLVKHAQARTSPEKPASA 752
SHH T STS TR S H E S P A A T P P+ A
Sbjct: 618 SHHPRGALTSSTSTTRLDSAHAESSPPLARTSPASAHTFPSHPSRA 663
>UniRef50_A0BDG5 Cluster: Chromosome undetermined scaffold_100, whole
genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_100, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 1420
Score = 34.3 bits (75), Expect = 4.2
Identities = 17/67 (25%), Positives = 37/67 (55%)
Frame = +1
Query: 541 SHLRLPVQTHKTFYHHANFLPQQILPATTQTTILRVPPLLHDVTLTLKEANREHLSSTHK 720
+H+++ + +K F+ N P+QIL +QT + P L+ + +KE ++ + +K
Sbjct: 1089 AHMKIDLIQNKIFFED-NLAPKQILVTLSQTLPKQSPKLIPRIIYNVKELIKDPPNDKYK 1147
Query: 721 HALHRKN 741
H L +++
Sbjct: 1148 HMLLKRH 1154
>UniRef50_Q8MXK9 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 2083
Score = 33.9 bits (74), Expect = 5.6
Identities = 25/71 (35%), Positives = 35/71 (49%)
Frame = +3
Query: 234 DGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQSPTRRRALAQVQPERG 413
+ +RA D T P GA+ + R DAGS S+ + T+ P +RR A+V R
Sbjct: 1288 ENSRA-DVLTRAPPGASDSTGALTKRDDAGSTASRGVVPQSTAAMPPKRRHEAEVAMRRA 1346
Query: 414 GSNIGSPCWRR 446
S + SP RR
Sbjct: 1347 LSEV-SPDTRR 1356
>UniRef50_Q22002 Cluster: Putative uncharacterized protein mab-10;
n=2; Caenorhabditis|Rep: Putative uncharacterized
protein mab-10 - Caenorhabditis elegans
Length = 502
Score = 33.9 bits (74), Expect = 5.6
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +3
Query: 534 AEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCY----SHTEGSQPRT 701
A + P T S + PP TA + + NF+G+ S+TR S T QP T
Sbjct: 205 AGILPATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTRHLVVPPSSTSIQQPST 264
Query: 702 LVKHAQARTSPEKPASAS 755
+ + T EK S+S
Sbjct: 265 SFGRSSSITGQEKEGSSS 282
>UniRef50_Q7S4U0 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 1272
Score = 33.9 bits (74), Expect = 5.6
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 219 RNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQSPTRRRALAQ 395
R+ G G+ A SG+ PTRT+ R G ARS S + TS P+ + + Q
Sbjct: 1060 RSGSGSGSGAGRPRAGSGSGSNGSPTRTTGRRLGGRARSSSSSSSSTSNKPSMSKIMDQ 1118
>UniRef50_Q4P4G4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 863
Score = 33.9 bits (74), Expect = 5.6
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +3
Query: 213 HGRNRQGDGT---RAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELF 350
H +++ D T R T+ +P+ TS PTR++P C + S+R + + F
Sbjct: 262 HAFDQRRDSTGPSRPSTSTSSNPTVCTSTPTRSAPSCSSSSSRKRKKQF 310
>UniRef50_Q9ERH4 Cluster: Nucleolar and spindle-associated protein
1; n=6; Murinae|Rep: Nucleolar and spindle-associated
protein 1 - Mus musculus (Mouse)
Length = 427
Score = 33.9 bits (74), Expect = 5.6
Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Frame = +3
Query: 186 PSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDA-GSARSQSELFNDTS 362
P+ + P H + A EH T P R SP A GSA +F
Sbjct: 251 PARQQCPQGHSATKMNVRFSAATKDNEHKCSLTKTPARKSPHVTAPGSASKGQAVFRTPK 310
Query: 363 QSPTRRRALAQVQP 404
T R ++A + P
Sbjct: 311 SKATERTSIAVITP 324
>UniRef50_Q80TN7 Cluster: Neuron navigator 3; n=38; Euteleostomi|Rep:
Neuron navigator 3 - Mus musculus (Mouse)
Length = 2359
Score = 33.9 bits (74), Expect = 5.6
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Frame = +3
Query: 147 SSKVSV*LQPLPHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPS-GATSLPTRTSPRCDAG 323
SSK ++ + LP PS +T + GR T ++D S GAT+ R + G
Sbjct: 1131 SSKTTLQYRSLPRPSKSSTSGIPGRGGHRSSTSSIDSNVSSKSAGATTSKLREPTK--IG 1188
Query: 324 SARSQSELFNDTSQSPTRRRALAQVQPERGGSNIGSP 434
S RS N T + + GS SP
Sbjct: 1189 SGRSSPVTVNQTDKEKEKVAVSDSESVSLSGSPKSSP 1225
>UniRef50_Q8IVL0 Cluster: Neuron navigator 3; n=36; cellular
organisms|Rep: Neuron navigator 3 - Homo sapiens (Human)
Length = 2385
Score = 33.9 bits (74), Expect = 5.6
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Frame = +3
Query: 147 SSKVSV*LQPLPHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPS-GATSLPTRTSPRCDAG 323
SSK ++ + LP PS +T + GR T ++D S GAT+ R + G
Sbjct: 1128 SSKTTLQYRSLPRPSKSSTSGIPGRGGHRSSTSSIDSNVSSKSAGATTSKLREPTK--IG 1185
Query: 324 SARSQSELFNDTSQSPTRRRALAQVQPERGGSNIGSP 434
S RS N T + + GS SP
Sbjct: 1186 SGRSSPVTVNQTDKEKEKVAVSDSESVSLSGSPKSSP 1222
>UniRef50_Q0UD82 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 644
Score = 33.5 bits (73), Expect = 7.4
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +3
Query: 195 RNTPLLHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQSPT 374
RNT R+ +R + T + TS RT+PR A ++E+ T QS +
Sbjct: 53 RNTREASSRDAPSRSSRKLQDITRSANNQTSAAPRTTPRKTVNFADVENEV--RTPQSGS 110
Query: 375 RRRALAQVQPE 407
R+R A + PE
Sbjct: 111 RKRKTAYLSPE 121
>UniRef50_Q497S4 Cluster: Troap protein; n=8; Murinae|Rep: Troap
protein - Mus musculus (Mouse)
Length = 686
Score = 33.1 bits (72), Expect = 9.7
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Frame = +3
Query: 180 PHPSNRNTPLLHGRNRQGDG--TRAVDGTTEHPSGATSLPTRTSPRCD--AGSARSQSEL 347
P+PS P+L R + +R++D + P P R++ R +A +S+
Sbjct: 35 PNPSK--IPVLSQRCQDFSSVKSRSLDQENQDPRTPAQKPPRSTQRQRPLTDTAGLRSKT 92
Query: 348 FNDTSQSP---TRRRALAQVQPERGGSNIG 428
+ T +SP T R L +++P GGSN+G
Sbjct: 93 LHQTEKSPSLKTLRNPLEELKPSSGGSNVG 122
>UniRef50_Q8XQ72 Cluster: Putative uncharacterized protein; n=1;
Ralstonia solanacearum|Rep: Putative uncharacterized
protein - Ralstonia solanacearum (Pseudomonas
solanacearum)
Length = 119
Score = 33.1 bits (72), Expect = 9.7
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 342 LTAIARCRRRSAATFSWVRTWHQTGAP*CHRPHGYH-HPAYFCREAVVYFGLKGGAAVV 169
L IA CR RSA T W R AP +RP PA F R + Y G + G A +
Sbjct: 49 LARIASCRERSATTSRWCRP--DGRAPPPNRPRAPRCAPAMFRRFPIEYTGRRPGDAAI 105
>UniRef50_Q88RX4 Cluster: Putative uncharacterized protein lp_3683;
n=1; Lactobacillus plantarum|Rep: Putative
uncharacterized protein lp_3683 - Lactobacillus
plantarum
Length = 322
Score = 33.1 bits (72), Expect = 9.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 552 PEVRLPRSRPTQSARTGQIASTVRRPADGSAK 457
P V+ P+S PT+ A+T Q ++ +PA AK
Sbjct: 88 PTVQTPKSTPTRQAKTSQATTSAAKPATSKAK 119
>UniRef50_A6UXC2 Cluster: Lipoprotein, putative; n=5; Pseudomonas
aeruginosa|Rep: Lipoprotein, putative - Pseudomonas
aeruginosa PA7
Length = 145
Score = 33.1 bits (72), Expect = 9.7
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -2
Query: 490 DGTEAGRRVRQTTRPRLQHGLPILEPPRSGCTCARARRLVGDC 362
DG EAGRR R RP+L+ L +L R G AR+ C
Sbjct: 101 DGFEAGRRYRLEVRPQLRRALALLSDER-GAVVARSNFQTSRC 142
>UniRef50_A5V7S9 Cluster: TonB-dependent receptor, plug precursor;
n=1; Sphingomonas wittichii RW1|Rep: TonB-dependent
receptor, plug precursor - Sphingomonas wittichii RW1
Length = 754
Score = 33.1 bits (72), Expect = 9.7
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Frame = -2
Query: 499 DRLDGTEAGRRVRQTTRPRLQHGLPILEPPRSGCTCARA--RRLVGDCEVSLNNSDCDRA 326
D+ G +AG R TT P + GL + PP + TC A R L + + N +A
Sbjct: 258 DQDKGEDAGDRNISTTDPLVVPGLTYVVPPSASLTCTNAYSRALCANGTLPNNRRYTTQA 317
Query: 325 LPASQR 308
LP R
Sbjct: 318 LPGPDR 323
>UniRef50_A2QUZ5 Cluster: Contig An10c0020, complete genome.
precursor; n=1; Aspergillus niger|Rep: Contig An10c0020,
complete genome. precursor - Aspergillus niger
Length = 298
Score = 33.1 bits (72), Expect = 9.7
Identities = 29/123 (23%), Positives = 46/123 (37%)
Frame = +3
Query: 516 TGWAATAEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEGSQP 695
T AAT + A+ ADS P TA T+H T S+S + S + S
Sbjct: 113 TAAAATTQAESSASSADSTSAEPTSAATTAAATTAHTTAVQTTSSSSSSESSSSSSESSS 172
Query: 696 RTLVKHAQARTSPEKPASASGXXXXXXXXXXXXXXCXVIGTTSIXRDXTXNPSSWAAGTN 875
+ + + + TSP S++ T+S + + SS ++ T
Sbjct: 173 SS-SESSSSSTSPVTTTSSTSTTSSSTTSSSSSSSTSTSSTSSTSSSASSSSSSTSSSTT 231
Query: 876 SRS 884
S S
Sbjct: 232 SAS 234
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 852,926,528
Number of Sequences: 1657284
Number of extensions: 16978678
Number of successful extensions: 56450
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 52904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56406
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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