Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C17
         (887 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    24   1.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.2  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   4.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   9.8  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 30  LIMLSXINVWTNSQPTLXLSGYW 98
           L+ +  I+VWT+ +    L G+W
Sbjct: 285 LLTVIPIHVWTSKEKISFLRGFW 307


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 655 LLHDVTLTLKEANREHLSSTHKHALHRKNLH 747
           L +D  L     N+ ++ +T +   H+KNL+
Sbjct: 150 LRNDFRLMSNNLNKNNVVATGRFTFHKKNLY 180


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 582 PPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTE 683
           P C   +++   SH +  +F+ ++S T    H E
Sbjct: 194 PTCSEASSSPTPSHSSESSFSAASSYTNTIYHQE 227


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 174 PLPHPSNRNTPL 209
           P PH SN +TP+
Sbjct: 10  PTPHESNTSTPV 21


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,201
Number of Sequences: 336
Number of extensions: 4364
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24617054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)