Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C17
         (887 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)                    34   0.13 
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_51421| Best HMM Match : VWA (HMM E-Value=3.5e-27)                   29   5.0  
SB_41119| Best HMM Match : Sec23_helical (HMM E-Value=7.4e-37)         29   5.0  
SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)                29   5.0  
SB_13655| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  

>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
          Length = 711

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 568 HKTFYHHANFLPQQILPATTQTTILRVPPLLHDVTLTLKEANREHLSSTHKHA 726
           HK F+       +  +P     +  RV  L HD+ L L+E   E + STH+ A
Sbjct: 139 HKDFFLRKQMDDEGYIPIALIASFYRVQALTHDMNLILEEMEVEAVESTHEEA 191


>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2141

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 88  VVTGTHRHPQRKRTTHLEIEVLRSQYSYNRCPTLQTEIHHCFTAEIGRVMV 240
           +VT TH+H      TH  + + +S ++  +C T    +  C     G V V
Sbjct: 474 IVTWTHKHLTIVTWTHKHLTIKQSDFAIKQCNTAIRSLEQCLEILRGEVEV 524


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
 Frame = +3

Query: 144  RSSKVSV*LQPLPHPSNRNT----PLLHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPR 311
            RSS+    ++ L HPS+RN+     L H   R G   +++     HPS       +T   
Sbjct: 1345 RSSRNDGRMKSLAHPSSRNSGRMKSLAHPSRRNGGRMKSL----AHPSSRNGGRMKTLAH 1400

Query: 312  CDAGSARSQSELFNDTSQSPTRRRALAQVQPERGG--SNIGSPCWRRG 449
                +      L + +S+   R ++LA     +GG   ++  P  R+G
Sbjct: 1401 PSRRNGGRMKTLAHPSSRKGGRMKSLAHRSGRKGGRMKSLAHPSNRKG 1448



 Score = 28.3 bits (60), Expect = 8.8
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)
 Frame = +3

Query: 144  RSSKVSV*LQPLPHPSNRN----TPLLHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPR 311
            RSS+    ++ L HPS+RN      L H  +R G   +++     HPS       +T   
Sbjct: 1205 RSSRNGGRMKTLAHPSSRNGGRMKSLAHPSSRNGGRMKSL----AHPSSRKGGRMKTLAH 1260

Query: 312  CDAGSARSQSELFNDTSQSPTRRRALAQVQPERGG--SNIGSPCWRRG 449
              +        L + +S+   R ++LA      GG    +  P  R+G
Sbjct: 1261 RSSRKGGRMKTLAHPSSRKGGRMKSLAHRSGRNGGRMKTLAHPSSRKG 1308


>SB_51421| Best HMM Match : VWA (HMM E-Value=3.5e-27)
          Length = 576

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +3

Query: 171 QPLPHPSNRNTPL-LHGRNR 227
           +PLP PSNR  P  LHGR R
Sbjct: 155 RPLPTPSNRRPPFNLHGRGR 174


>SB_41119| Best HMM Match : Sec23_helical (HMM E-Value=7.4e-37)
          Length = 875

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +1

Query: 562 QTHKTFYHHANFLPQQILPATTQTTILRVPPLLHDVTLTLKEANREHLSSTHKH 723
           QTH T   H N L QQ+L  T +  +L      HDV L     +   L +T++H
Sbjct: 52  QTHSTGTIH-NRLIQQVLSTTYRHDVLLQTTYRHDVLLQTTYRHDVLLQTTYRH 104


>SB_21812| Best HMM Match : GRASP55_65 (HMM E-Value=2.3)
          Length = 660

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
 Frame = +3

Query: 180 PHPSNRNTPLLHGRNRQGDGTRAVDGTTEH------PSGATSLPTRTSPRCDAGSARSQS 341
           P PS  +TP    R+R G  TR     T         +G  +  T+T+ +C    +R Q+
Sbjct: 564 PPPSRTSTP----RSRAGSRTRTPPTPTSSRASSRGSAGGGAKTTKTTKKCSTRKSRGQN 619

Query: 342 ELFNDTSQSPTRRRALAQVQPERGGSNI---GSPCWR 443
                 ++  T  R       +RGG  +    +P WR
Sbjct: 620 GDTTTKTKCVTTLRVSGHGTNQRGGQVLVGKSNPAWR 656


>SB_13655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 189 SNRNTPLLHGRNRQGDGTRAVDGTT-EHPSGATSLPTRTSPRCDAGSARSQSELFNDTSQ 365
           S   +P   G N  G    A   +  +HP+  +S   R+SP   AG  RS  E+F+D+  
Sbjct: 19  SELESPPEDGENSDGFANDAGSSSAKQHPTSPSSASPRSSPTRKAGLRRS-VEIFSDSDS 77

Query: 366 S 368
           +
Sbjct: 78  T 78


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,086,047
Number of Sequences: 59808
Number of extensions: 588773
Number of successful extensions: 2072
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2063
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)