Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C17
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical pr...    34   0.16 
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    31   1.5  
AF025460-2|AAF02169.3|  545|Caenorhabditis elegans Prion-like-(q...    30   1.9  
AC006675-8|AAK84554.1|  414|Caenorhabditis elegans Hypothetical ...    30   1.9  
AY204206-1|AAO39207.1|  477|Caenorhabditis elegans nuclear recep...    29   3.4  
AY204205-1|AAO39206.1|  141|Caenorhabditis elegans nuclear recep...    29   3.4  
AF039048-15|AAK68332.2|  477|Caenorhabditis elegans Nuclear horm...    29   3.4  
AF039048-14|AAM29674.1|  435|Caenorhabditis elegans Nuclear horm...    29   3.4  
Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z82280-3|CAB05265.1|  387|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical
           protein R166.1 protein.
          Length = 502

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = +3

Query: 534 AEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCY----SHTEGSQPRT 701
           A + P  T   S  + PP    TA   + +    NF+G+ S+TR      S T   QP T
Sbjct: 205 AGILPATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTRHLVVPPSSTSIQQPST 264

Query: 702 LVKHAQARTSPEKPASAS 755
               + + T  EK  S+S
Sbjct: 265 SFGRSSSITGQEKEGSSS 282


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/72 (27%), Positives = 32/72 (44%)
 Frame = -2

Query: 415 PPRSGCTCARARRLVGDCEVSLNNSDCDRALPASQRGDVLVGKDVAPDGCSVVPSTARVP 236
           PP  GC C R +R V D E  + N D D      +  +VL     +    S+V   + +P
Sbjct: 59  PPMCGCGCGRKKRSVDDVE-GVINMDSDVECNNEELREVLENNMKSTPSDSLVSVRSNLP 117

Query: 235 SPCLFLP*SSGV 200
           +   F+  + G+
Sbjct: 118 TDQYFVTCTHGL 129


>AF025460-2|AAF02169.3|  545|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 41
           protein.
          Length = 545

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +3

Query: 180 PHPSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGA--TSLPTRTSPRCDAGSARSQSELFN 353
           P P   + P++ G  RQG   +A   TT   +     S+ T   P     SA +Q +  +
Sbjct: 94  PPPPASSAPIV-GAPRQGATPQAAPATTPATTSQHQQSIATPKPPVVRPPSAATQQQPVS 152

Query: 354 DTSQSPTRRRALAQVQPERGGS 419
            TSQ+  +++   Q+Q +R  +
Sbjct: 153 VTSQASQQQQQFQQIQQQRAAA 174


>AC006675-8|AAK84554.1|  414|Caenorhabditis elegans Hypothetical
           protein M02H5.4 protein.
          Length = 414

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -3

Query: 264 P*CHRP-HGYHHPAYFCREAVVYF 196
           P C++P HG H  AY CR   V+F
Sbjct: 23  PVCYKPPHGIHFGAYTCRACAVFF 46


>AY204206-1|AAO39207.1|  477|Caenorhabditis elegans nuclear receptor
           NHR-117 protein.
          Length = 477

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 258 CHRP-HGYHHPAYFCREAVVYF 196
           C++P HGYH  A+ CR    +F
Sbjct: 37  CYQPGHGYHFGAFICRACAAFF 58


>AY204205-1|AAO39206.1|  141|Caenorhabditis elegans nuclear receptor
           NHR-117 protein.
          Length = 141

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 258 CHRP-HGYHHPAYFCREAVVYF 196
           C++P HGYH  A+ CR    +F
Sbjct: 37  CYQPGHGYHFGAFICRACAAFF 58


>AF039048-15|AAK68332.2|  477|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 117, isoform b protein.
          Length = 477

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 258 CHRP-HGYHHPAYFCREAVVYF 196
           C++P HGYH  A+ CR    +F
Sbjct: 37  CYQPGHGYHFGAFICRACAAFF 58


>AF039048-14|AAM29674.1|  435|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 117, isoform a protein.
          Length = 435

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 258 CHRP-HGYHHPAYFCREAVVYF 196
           C++P HGYH  A+ CR    +F
Sbjct: 37  CYQPGHGYHFGAFICRACAAFF 58


>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
 Frame = +2

Query: 689 PTANTCQARTSTHFTGKTCIR--QRNP-----NTAASPDTNASNVXC 808
           P+ ++CQ+  S+  T  TCIR  QRN      NT ++  TN  N  C
Sbjct: 90  PSCSSCQSACSSACTTPTCIRTCQRNSCSNLCNTGSNSCTNRCNSQC 136


>Z82280-3|CAB05265.1|  387|Caenorhabditis elegans Hypothetical
           protein R05A10.3 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 234 DGTRAVDGTTEHPSGATSLP 293
           D TR  DG+T++P G+T +P
Sbjct: 172 DYTRYTDGSTDYPGGSTDVP 191


>U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical
           protein E04F6.4 protein.
          Length = 635

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/66 (21%), Positives = 27/66 (40%)
 Frame = +1

Query: 538 KSHLRLPVQTHKTFYHHANFLPQQILPATTQTTILRVPPLLHDVTLTLKEANREHLSSTH 717
           K H +  +   +TF   +N+ P+    +T    I+   P   D+   +K     +  ST+
Sbjct: 513 KMHAKFMISESRTFIGSSNYGPEYFYKSTGTAIIVDEEPHYGDINRQIKAVFERYWHSTY 572

Query: 718 KHALHR 735
              L +
Sbjct: 573 SQKLQK 578


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,266,309
Number of Sequences: 27780
Number of extensions: 399874
Number of successful extensions: 1235
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)