Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C17
         (887 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ...    33   0.33 
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co...    32   0.44 
At1g27850.1 68414.m03413 expressed protein similar to En/Spm-lik...    31   1.4  
At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related...    30   1.8  
At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family...    28   9.5  

>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
           profile: PF03399 SAC3/GANP family
          Length = 1720

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = -2

Query: 421 LEPPRSGCTCARARRLVGDCEVSLNNSDCDRALP--ASQRGDVLVGKDVAPDGCSVVPST 248
           ++PP S    A A +  G   +    S   RA P  ASQ   + +GK   P G   VP  
Sbjct: 52  IQPPASQNHSAFAGQSFGPGGIRSGPS-IQRAPPLSASQNPQLSIGKPYRPGGVQSVPPI 110

Query: 247 ARVPSPCLF 221
            R+PSP  F
Sbjct: 111 NRIPSPSAF 119


>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
           contains seven G-protein beta WD-40 repeats; beta
           transducin-like protein, Podospora anserina, gb:L28125;
           contains Pfam profiles PF04503:  Single-stranded DNA
           binding protein, SSDP; PF00400:WD domain, G-beta repeat;
           identical to cDNA LEUNIG (LEUNIG) GI:11141604
          Length = 931

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +3

Query: 186 PSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGATSLPTRTSPRCDAGSARS-QSELFNDTS 362
           P ++  P    + ++ DG+   +G+     G  S P     R + GS  S  S+ + +  
Sbjct: 171 PQHQQQPTPQQQPQRRDGSHLANGSANGLVGNNSEPVM---RQNPGSGSSLASKAYEERV 227

Query: 363 QSPTRRRALAQVQPERGGSNIG 428
           + PT+R +L +   +R G N+G
Sbjct: 228 KMPTQRESLDEAAMKRFGDNVG 249


>At1g27850.1 68414.m03413 expressed protein similar to En/Spm-like
           transposon protein GB:AAB95292 GI:2088658 from
           [Arabidopsis thaliana]
          Length = 1148

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
 Frame = +3

Query: 186 PSNRNTPLLHGRNRQGDGTRAVDGTTEHPSGATS-LPTRTSPRCDAGSARSQSELFNDTS 362
           PS+   P      R G   R +  T   PSG  S  PT TS R   GS    S     TS
Sbjct: 170 PSSARHPSPASGRRSGTPVRRISPTPGKPSGPVSRSPTPTSRRMSTGSTTMASPAVRGTS 229

Query: 363 QSPTRR 380
              + R
Sbjct: 230 PVSSSR 235


>At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 244

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +1

Query: 94  TGTHRHPQRKRTTHLEIEVLRSQYSYNRCPTLQTEIHHCF 213
           + TH+H Q+ +++ + +EVL  + + N  P    +I+ C+
Sbjct: 11  SSTHKHDQKLKSSVVAMEVLEEKETVNNPPQYYNKIYICY 50


>At4g23000.1 68417.m03318 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 932

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 522 WAATAEVSPPATCADSQDILPPCKLLTATNLTSHHANYNFTGST 653
           W    E++   +C DS D + P   L AT +  + ANY    ST
Sbjct: 279 WVIYGELACNGSCPDSSDEISPIYSLWATFIGLYIANYVVERST 322


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,378,766
Number of Sequences: 28952
Number of extensions: 371607
Number of successful extensions: 1131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)