Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C16
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 38 0.001
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 30 0.50
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.5
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 3.5
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 27 4.6
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 26 6.1
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 8.1
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 38.3 bits (85), Expect = 0.001
Identities = 24/76 (31%), Positives = 40/76 (52%)
Frame = +3
Query: 213 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTAGVPQ 392
DI FD + H+ LI L + R + +IR L N + T +R ++ G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423
Query: 393 GSALSPLLFSLYINDI 440
GS +SP+L ++Y++ +
Sbjct: 424 GSIVSPILANIYLHQL 439
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 29.9 bits (64), Expect = 0.50
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Frame = +1
Query: 328 RSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIW-RSSPMTPPSTTRV 504
++D+ RVP P S + K+PPS I + P L+ P RSS +P T
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243
Query: 505 GRRRCFIDDFRPQLPP 552
+ I D PP
Sbjct: 244 SSKTFVIVDHSTPSPP 259
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 564 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 680
F+ W+ P+ S +L ++G PP + LS L ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 630 PP--NTTLSIPLPTRRVNNPPPPFXQSRCSTSPYRGPRRSN 746
PP N SIPLP + + PPPP +S ST P S+
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSS 382
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Frame = +3
Query: 630 PPNTTLS--IPLPTRRVNN-------PPPPFXQSRCSTSPYRGPRRS 743
PP +T + +P+P+R VNN PPPP S+ P RS
Sbjct: 247 PPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPPTNASTRS 293
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 3.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 337 IESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPS 492
+ +++R P+ P R PP R + I I PGL SS TP S
Sbjct: 413 LNNQQRESAPLL--PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 26.6 bits (56), Expect = 4.6
Identities = 26/107 (24%), Positives = 42/107 (39%)
Frame = +3
Query: 414 LFSLYINDIPRSPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWFRKWRIDINP 593
L + Y + +P+ ETH D C+ + LL +A T+ D
Sbjct: 278 LLAAYGSKVPKPSETHTDPEKDKKIFSKICKTEELLELPTLSAVTS----------DSAQ 327
Query: 594 TKSTAVLFKRGRPPNTTLSIPLPTRRVNNPPPPFXQSRCSTSPYRGP 734
S +P + + S+PL N+ P P S+ ++SP R P
Sbjct: 328 PHSLPASMPSSQPQSRSESLPLT--HPNSEPNPKLDSQPNSSPVRRP 372
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 6.1
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +3
Query: 531 LQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNNPPPPFXQSRC 710
L + ++G+ +K ID+ S V+ + TL+IP P + V R
Sbjct: 223 LSNWSASLGEEVKKQGIDVWCFNSYLVVSAMSKVRRPTLTIPTPKKFVRAALSSIGLQRG 282
Query: 711 STSPY 725
T+PY
Sbjct: 283 GTNPY 287
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 381 GVPQGSALSPLLFSLYINDI 440
G+PQGS LS L Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,587,514
Number of Sequences: 5004
Number of extensions: 80788
Number of successful extensions: 263
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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