Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C16
(876 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30810.1 68414.m03767 transcription factor jumonji (jmj) fami... 31 0.76
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 31 1.0
At1g10620.1 68414.m01204 protein kinase family protein contains ... 31 1.0
At5g06970.1 68418.m00789 expressed protein 30 2.3
At4g13390.1 68417.m02092 proline-rich extensin-like family prote... 30 2.3
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 30 2.3
At2g41360.1 68415.m05105 F-box family protein similar to SKP1 in... 29 3.1
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 29 4.1
At1g70895.1 68414.m08180 CLE17, putative CLAVATA3/ESR-Related 17... 29 4.1
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 29 4.1
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 29 5.4
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 29 5.4
At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1) domain... 29 5.4
At3g24540.1 68416.m03082 protein kinase family protein contains ... 28 7.1
At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase fam... 28 7.1
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 28 7.1
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 28 7.1
At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase fam... 28 7.1
At3g15000.1 68416.m01897 expressed protein similar to DAG protei... 28 9.4
>At1g30810.1 68414.m03767 transcription factor jumonji (jmj) family
protein / zinc finger (C5HC2 type) family protein
contains similarity to Swiss-Prot:P29375
retinoblastoma-binding protein 2 (RBBP-2) [Homo
sapiens]; contains Pfam domains PF02375: jmjN domain and
PF02373: jmjC domain; intron between exons 6 and 7 was
required to circumvent a frameshift. There could be an
underlying sequence error.
Length = 787
Score = 31.5 bits (68), Expect = 0.76
Identities = 19/87 (21%), Positives = 33/87 (37%)
Frame = +1
Query: 325 VRSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRV 504
++ D+ + P + + P SPR+ V + +RPI +P+ PS
Sbjct: 10 IKEDMSLKNHPPDKDKDKDTIMEQPSSPRHRKVVARWLPDEAQRPIINDAPVFTPSLEEF 69
Query: 505 GRRRCFIDDFRPQLPPWDXXXXXXAST 585
+I+ RP P+ ST
Sbjct: 70 VDPLAYIEKIRPLAEPYGICRIIPPST 96
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = +1
Query: 256 YTNCITWECQTDSCSSYETTCRTVRSDIESRERVPGPVTSQPESRKAPPSPRYYSVCIST 435
Y + W+C T S S + + I S P P P+ PP+P+ S +
Sbjct: 55 YGDSKVWKC-TYSNGSAPAISISPSTPIPSTPSTPSPPPPAPKKSPPPPTPK-KSPSPPS 112
Query: 436 IYPGLRRPIWRSSPMTPPS 492
+ P + P + SP PP+
Sbjct: 113 LTPFVPHPTPKKSPSPPPT 131
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +3
Query: 618 KRGRPPNTTLSIPLPTRRVNNPPPPFXQSRCSTSPYRGPRRSNI*ASPRQ*DDIPPPHQX 797
K PP+ T +P PT + + PPP S +P + P ++ + PPP
Sbjct: 106 KSPSPPSLTPFVPHPTPKKSPSPPP-TPSLPPPAPKKSPSTPSLPPPTPKKSPPPPPSHH 164
Query: 798 GTRP 809
+ P
Sbjct: 165 SSSP 168
>At1g10620.1 68414.m01204 protein kinase family protein contains
serine/threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 718
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +1
Query: 364 PVTSQPESRKAPPSPRYYSVCISTIYPGLRRPIWRSSPMTPPSTTRVGRRRCFIDDFRPQ 543
P +QP + PP+P S+ P + P P PP +T G I +PQ
Sbjct: 68 PPPNQPPNTTPPPTPP------SSPPPSITPPPSPPQPQPPPQSTPTGDSPVVIPFPKPQ 121
Query: 544 LPP 552
LPP
Sbjct: 122 LPP 124
>At5g06970.1 68418.m00789 expressed protein
Length = 1101
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +1
Query: 379 PESRKAPP--SPRYYSVCISTIYPGLRRPIWRSSPMTPP 489
PES +PP +P V IS+ P + P W SP PP
Sbjct: 98 PESSGSPPKRAPPPIPVLISSSSPMVTNPEWCESPSAPP 136
>At4g13390.1 68417.m02092 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 429
Score = 29.9 bits (64), Expect = 2.3
Identities = 21/60 (35%), Positives = 25/60 (41%)
Frame = +3
Query: 630 PPNTTLSIPLPTRRVNNPPPPFXQSRCSTSPYRGPRRSNI*ASPRQ*DDIPPPHQXGTRP 809
PP T S P P N+PPPP+ S PY P SP PPP+ + P
Sbjct: 134 PPLTYYS-PSPKVIYNSPPPPYIYSSPPPPPYYSPSPKVDYKSP------PPPYVYSSPP 186
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = +3
Query: 600 STAVLFKRGRPPNTTLSIPLPTRRVNNPPPPFXQSRCSTSPYRGPRRSNI*ASPRQ*DDI 779
S V +K PP S+P P N+PPPP S T Y+ P + SP
Sbjct: 323 SPRVDYKSPPPPYVYNSLP-PPYVYNSPPPPPYYSPSPTVNYKSPPPPYVYNSPP----- 376
Query: 780 PPPH 791
PPP+
Sbjct: 377 PPPY 380
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +3
Query: 630 PPNTTLSIPLPTRRVNNPPPPFXQSRCSTSPYRGP 734
PP P PT +PPPP+ + PY P
Sbjct: 349 PPPPPYYSPSPTVNYKSPPPPYVYNSPPPPPYYSP 383
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 630 PPNTTLSIPLPTRRVNNPPP-PFXQSRCSTSPYRGPRRSNI*ASPRQ*DDIPPP 788
PP T S+P PT V+ PPP P T P P + + P + PP
Sbjct: 101 PPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 154
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +3
Query: 630 PPNTTLSIPLPTRRVNNPPP-PFXQSRCSTSPYRGPRRSNI*ASPRQ*DDIPPP 788
PP T S+P PT V+ PPP P T P P + + P + PP
Sbjct: 83 PPPPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 136
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 630 PPNTTLSIPLPTRRVNNPPPPFXQSRCSTSP 722
PP T S+P PT V+ PPP S S +P
Sbjct: 137 PPTPTPSVPSPTPPVSPPPPTPTPSVPSPTP 167
>At2g41360.1 68415.m05105 F-box family protein similar to SKP1
interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profile PF00646: F-box domain
Length = 373
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -1
Query: 261 CISNRCARLCRTPSLYRRRGLL 196
C+S R L RTP LYR R LL
Sbjct: 36 CVSVRLRSLVRTPELYRMRSLL 57
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/59 (27%), Positives = 29/59 (49%)
Frame = +3
Query: 633 PNTTLSIPLPTRRVNNPPPPFXQSRCSTSPYRGPRRSNI*ASPRQ*DDIPPPHQXGTRP 809
PN +++P P +NP PP S +++P P S+ ++P +P P + + P
Sbjct: 122 PNPPVTVPNPPESSSNPNPPDSSSNPNSNP--NPPESS--SNPNPPVTVPNPPESSSNP 176
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +3
Query: 633 PNTTLSIPLPTRRVNNPPPPFXQSRCS---TSPYRGPRRSNI*ASPRQ*DDIPPPHQXGT 803
PN +++P P +NP PP S + T PY P S +SP + +P P + G
Sbjct: 160 PNPPVTVPNPPESSSNPNPPESSSNPNPPITIPY--PPES---SSPNPPEIVPSPPESGY 214
Query: 804 RP 809
P
Sbjct: 215 TP 216
>At1g70895.1 68414.m08180 CLE17, putative CLAVATA3/ESR-Related 17
(CLE17)
Length = 99
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +3
Query: 681 PPPPFXQSRCSTSPYRGP 734
PPPP R ST+P+RGP
Sbjct: 59 PPPPRKALRYSTAPFRGP 76
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 358 PGPVTSQPESRKAPPSPRY-YSVCISTIYPGLRRPIWRSSPMTPPST 495
P PV + P + ++PP P+Y + YP P ++ + PP T
Sbjct: 565 PPPVVNCPPTTQSPPPPKYEQTPSPREYYPSPSPPYYQYTSSPPPPT 611
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +1
Query: 358 PGPVTSQPESRKAPPSPRYYSVCISTIYPG--LRRPIWRSSPMTPP 489
P PV P + PP P YY+ I + P P+ +S P PP
Sbjct: 635 PPPVYYPPVTASPPPPPVYYTPVIQSPPPPPVYYSPVTQSPPPPPP 680
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +3
Query: 627 RPPNTTLSIPLPTRRVNNPPPPFXQSRCSTSPYRGPRRSNI*ASPRQ*DDIPPPHQXGTR 806
R P + S P PT PPPP Q+R ++P P + SP ++PP T
Sbjct: 762 RLPTHSASPPPPTAP---PPPPLGQTRAPSAPPPPPPKLGTKLSPSG-PNVPPTPALPTG 817
Query: 807 P 809
P
Sbjct: 818 P 818
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 28.7 bits (61), Expect = 5.4
Identities = 34/119 (28%), Positives = 45/119 (37%), Gaps = 7/119 (5%)
Frame = +2
Query: 113 RQTLVRPSSAPPHGAHLTRAEQAETH----SDRSPLLRYS-EGVRQSLAQRFDIQTV*HG 277
R L RP G +R++Q H S RS R + S + R
Sbjct: 467 RARLSRPLQKAGKGRQSSRSDQRSRHGAGRSGRSSFARLPPRSLASSRSARGAGSRAPSS 526
Query: 278 SARQTRAHHTRLLVEPFVPISSRGNAFPAPSRHSRSP--ARLRPLPVTIQFVYQRYTPV 448
SA++ R P +P +R P P+R P AR RPLP + Y R PV
Sbjct: 527 SAKRASGSRGRR-PRPPLPPPARARPLPPPARARPMPPPARARPLPPPAR-SYDRRPPV 583
>At1g70640.1 68414.m08143 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile PF00564:
PB1 domain
Length = 174
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/58 (29%), Positives = 25/58 (43%)
Frame = +3
Query: 570 KWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNNPPPPFXQSRCSTSPYRGPRRS 743
K + ++P KST PP+TT S +R +PP P C + R R +
Sbjct: 100 KIHVFLSPLKSTRTTANSSPPPSTTSSSSSKSRS-RSPPSPSTPETCPSCVERSIRNN 156
>At3g24540.1 68416.m03082 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 509
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +3
Query: 630 PPNTTLSIPLPTRRVNNPPPPFXQSRCSTSPYRGPRRSNI*ASPRQ*DDIPPP 788
PP + +P P PPPP S SP PR + PR + PPP
Sbjct: 42 PPPPQVFVPEPLFS-EPPPPPKAPVNVSLSPPPPPRSPSTSTPPRLGNRNPPP 93
>At3g14790.1 68416.m01869 NAD-dependent epimerase/dehydratase family
protein similar to dTDP-glucose 4,6-dehydratase from
Aneurinibacillus thermoaerophilus GI:16357461,
Saccharopolyspora spinosa GI:15077647, RmlB from
Leptospira borgpetersenii GI:4234803; contains Pfam
profile PF01370 NAD dependent epimerase/dehydratase
family
Length = 664
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/37 (35%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 213 DIAKAFDKVWHNGLIYKLYNMGVP-DRLVLIIRDYLS 320
D+A+AF+ V H G + +YN+G +R V+ + + +S
Sbjct: 230 DVAEAFEVVLHKGEVNHVYNIGTTRERRVIDVANDIS 266
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = +3
Query: 654 PLPTRRVNNPPPPFXQSRCSTSPYRGPRRSNI*ASPRQ*DDIPPPHQ 794
P P+RR +P PP + R S SP RRS + R PP Q
Sbjct: 304 PAPSRRRRSPSPPARRRR-SPSPPARRRRSPSPPARRHRSPTPPARQ 349
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 588 NPTKSTAVLFKRGRPPNTTLSIPLPTRRVNNPPPPFXQSRCSTSPYRGP 734
+P + V F+R PP S P P +++PPPP S P P
Sbjct: 480 DPYDQSPVKFRRSPPPPPVHS-PPPPSPIHSPPPPPVYSPPPPPPVYSP 527
>At1g53500.1 68414.m06066 NAD-dependent epimerase/dehydratase family
protein low similarity to dTDP-D-glucose-4,6-dehydratase
from Aneurinibacillus thermoaerophilus GI:16357461,
Sphingomonas sp. GI:1314581; contains Pfam profile
PF01370: NAD dependent epimerase/dehydratase family;
putative NDP-rhamnose synthase (rhm2 gene) GI:31559258
Length = 667
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 213 DIAKAFDKVWHNGLIYKLYNMGV--PDRLVLIIRD 311
D+A+AF+ V H G I +YN+G R++ + RD
Sbjct: 232 DVAEAFEVVLHKGEIGHVYNVGTKRERRVIDVARD 266
>At3g15000.1 68416.m01897 expressed protein similar to DAG protein
(required for chloroplast differentiation and palisade
development) GB:Q38732 [Antirrhinum majus]
Length = 395
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Frame = +3
Query: 624 GRPPNTTLSIPLPTRRVNNPPPPFXQSRCSTSPYRGPRRSNI*AS-PRQ*DDIPPPHQXG 800
G PP + P P + PPP + G N P Q +PPP G
Sbjct: 299 GAPPQNNMGGPRPPQNYGGTPPPNYGGAPPANNMGGAPPPNYGGGPPPQYGAVPPPQYGG 358
Query: 801 TRP 809
P
Sbjct: 359 APP 361
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,495,884
Number of Sequences: 28952
Number of extensions: 472445
Number of successful extensions: 2229
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2055
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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