Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C14
(861 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-l... 371 e-101
UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck viru... 108 2e-22
UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red ... 104 3e-21
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 83 7e-15
UniRef50_P20124 Cluster: Coat protein; n=10; Tymovirus|Rep: Coat... 80 8e-14
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 75 3e-12
UniRef50_P35927 Cluster: Coat protein; n=2; Erysimum latent viru... 67 5e-10
UniRef50_P03608 Cluster: Coat protein; n=21; Turnip yellow mosai... 65 2e-09
UniRef50_P19128 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat ... 65 2e-09
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 64 6e-09
UniRef50_O89519 Cluster: Virion protein; n=2; Tymovirus|Rep: Vir... 63 8e-09
UniRef50_Q8QY74 Cluster: Coat protein; n=1; Passion fruit yellow... 62 2e-08
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 61 4e-08
UniRef50_O89518 Cluster: Virion protein; n=1; Wild cucumber mosa... 58 3e-07
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 55 3e-06
UniRef50_P15158 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat ... 52 1e-05
UniRef50_Q8V0G9 Cluster: Coat protein; n=1; Bermuda grass etched... 52 2e-05
UniRef50_UPI0000E47EB9 Cluster: PREDICTED: hypothetical protein,... 37 0.75
UniRef50_Q6CCA2 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 37 0.75
UniRef50_UPI0000DB7F80 Cluster: PREDICTED: similar to SSXT prote... 36 1.3
UniRef50_Q5JJ70 Cluster: Hypothetical membrane protein, conserve... 36 1.7
UniRef50_UPI0000F1EE24 Cluster: PREDICTED: similar to 2410089E03... 35 3.0
UniRef50_Q1HTT9 Cluster: A5L; n=1; Squirrelpox virus|Rep: A5L - ... 35 3.0
UniRef50_A6RXJ9 Cluster: Putative uncharacterized protein; n=2; ... 35 3.0
UniRef50_Q9LUV4 Cluster: Hydroxyproline-rich glycoprotein; n=6; ... 34 4.0
UniRef50_Q55FJ0 Cluster: WD40 repeat-containing protein; n=1; Di... 34 5.3
UniRef50_A2QU02 Cluster: Similarity: similarities correspond to ... 34 5.3
UniRef50_A4VPT0 Cluster: Integrase/recombinase XerC, putative; n... 33 9.3
>UniRef50_Q6AW70 Cluster: Coat protein; n=1; Bombyx mori Macula-like
latent virus|Rep: Coat protein - Bombyx mori Macula-like
latent virus
Length = 237
Score = 371 bits (913), Expect = e-101
Identities = 188/238 (78%), Positives = 192/238 (80%)
Frame = +1
Query: 19 MEEIVPLXVSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQXXXXXXXXXXXXXXXXXXX 198
MEEIVPL VSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQ
Sbjct: 1 MEEIVPLVVSAASAIPSLVNAFSSSKPPQTDNPSARSMDMQPLPSSDSVVLSSQPLPPAP 60
Query: 199 XXXXXXXXXXXXQRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLE 378
QRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLE
Sbjct: 61 PPPLGSSLGRSPQRLIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLE 120
Query: 379 AVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGY 558
AVVFPSAPSLKIPVTVDLCWTTADVTVEG NVLATPSS+RIT+GGLALMHQATLPCDLGY
Sbjct: 121 AVVFPSAPSLKIPVTVDLCWTTADVTVEGFNVLATPSSARITMGGLALMHQATLPCDLGY 180
Query: 559 INPIIKSPIPYTNHPRLNIHFHQSPEXXXXXXXXPGLKPPFVIRGSISVSHPLVTGHG 732
INPIIKSPIPYTNHPRLNIHFHQS + G+K VIRGSISVSHPLVTGHG
Sbjct: 181 INPIIKSPIPYTNHPRLNIHFHQSAD-AVLEGVRAGVKASVVIRGSISVSHPLVTGHG 237
>UniRef50_Q8UZB5 Cluster: Coat protein; n=1; Grapevine fleck
virus|Rep: Coat protein - Grapevine fleck virus
Length = 230
Score = 108 bits (259), Expect = 2e-22
Identities = 58/157 (36%), Positives = 85/157 (54%)
Frame = +1
Query: 247 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 426
+PFQ L++D+TGTE+ S+++ S P V ++ + YR A L +LEA V P+A S P TV
Sbjct: 68 LPFQFLWYDITGTESSYTSLSIASRPEVVTVARPYRHARLTSLEAFVQPTASSATYPQTV 127
Query: 427 DLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPR 606
DLCWT VT +L+ + RI G + LP +L +NP IK + YT+ PR
Sbjct: 128 DLCWTIDSVTPARSEILSVFGAQRIAWGSVHFSAPILLPAELSSLNPTIKDSVTYTDCPR 187
Query: 607 LNIHFHQSPEXXXXXXXXPGLKPPFVIRGSISVSHPL 717
L F+++ P + +IRG I S P+
Sbjct: 188 LTCGFYRNDACVALGSSAP-ICGSILIRGVIECSAPI 223
>UniRef50_Q71EB5 Cluster: 25kDa coat protein; n=1; Grapevine Red
Globe virus|Rep: 25kDa coat protein - Grapevine Red
Globe virus
Length = 235
Score = 104 bits (249), Expect = 3e-21
Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Frame = +1
Query: 247 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 426
+PFQ +++DLT ET S+ + S P S+ Y A L +LE VFP PS P++
Sbjct: 71 LPFQFIFYDLTNAETGFTSLDLASKPPFLSLTSPYAYAVLQSLELTVFPKNPSYTYPMSF 130
Query: 427 DLCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKSPIPYTNHP 603
D W ++ V++ G +L+T +R+T GG + + LP DL NP++K + Y N P
Sbjct: 131 DAHWHSSSVSITGSQILSTYGGTRVTFGGPITSSNPIILPADLRSTNPVVKDTVSYNNTP 190
Query: 604 RLNIHFHQSPEXXXXXXXXPGLKPPFVIRGSISVS 708
+L + FH++ + P + VIRG + S
Sbjct: 191 KLTVAFHKNTDAPAVSVTTPVIYGSIVIRGVVRCS 225
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 83.4 bits (197), Expect = 7e-15
Identities = 41/124 (33%), Positives = 67/124 (54%)
Frame = +1
Query: 247 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 426
+PFQ + D+ + + + ++S I YR A L L+A+V P+A S + P+T+
Sbjct: 1820 VPFQTVAMDVVAAGGNA-TFNLAGHVSLSEITAPYRKARLAELKAIVCPTAASFQSPITL 1878
Query: 427 DLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPR 606
DL W+T +V + +L +R IGG L H L DL Y+NP+IK + Y + P+
Sbjct: 1879 DLVWSTNNVIFTDLQILQVYGGTRFAIGGPLLSHTYELRADLSYLNPVIKDSVSYVDTPK 1938
Query: 607 LNIH 618
L ++
Sbjct: 1939 LTLN 1942
>UniRef50_P20124 Cluster: Coat protein; n=10; Tymovirus|Rep: Coat
protein - Ononis yellow mosaic virus
Length = 192
Score = 79.8 bits (188), Expect = 8e-14
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Frame = +1
Query: 241 LIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 420
+++PFQ DL G S +T+ S P ++ + YR A +V EAV+FP++ S K PV
Sbjct: 32 MVVPFQVSVSDL-GVSEVSAQITLSSDPTLAQLTSIYRMASIVECEAVLFPNSTSSKNPV 90
Query: 421 TVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQ-ATLPCDLGYINPIIKSPIPYTN 597
DL W ++ + +L T +R T+GG +Q + P L +NPIIK + Y +
Sbjct: 91 HCDLIWVPSNSSASPKTILQTYGGNRFTVGGPITSNQIISFPLRLDSVNPIIKDSVLYLD 150
Query: 598 HPRLNIHFHQSP 633
PRL + F +P
Sbjct: 151 SPRL-LAFSPAP 161
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 74.5 bits (175), Expect = 3e-12
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Frame = +1
Query: 250 PFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 429
PFQ + G+E K+ S + ++ ++ YR A L ++E V P A + P++V
Sbjct: 2034 PFQWVVASYDGSEAKNLSDDLSGSATLTKVMANYRHAELTSVELEVCPLAAAFSKPISVS 2093
Query: 430 LCWTTADVTVEGVNVLATPSSSRITIGGLALMHQAT-LPCDLGYINPIIKSPIPYTNHPR 606
WT A ++ + + T+GG LM T LP DL +NP++K P+ YT+ PR
Sbjct: 2094 AVWTIASISPASASETSYYGGRLFTVGGPVLMSSTTHLPADLTRLNPVLKGPVKYTDCPR 2153
Query: 607 LN 612
+
Sbjct: 2154 FS 2155
>UniRef50_P35927 Cluster: Coat protein; n=2; Erysimum latent
virus|Rep: Coat protein - Erysimum latent virus (ELV)
Length = 202
Score = 67.3 bits (157), Expect = 5e-10
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Frame = +1
Query: 250 PFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 429
PFQ F L + S ++ + + P +++ + +R A L L AVV PSA S+ P+TV
Sbjct: 46 PFQ-FEFPLPAGQEGSVTLPLATFPKMATFLSRHRRAQLTQLHAVVSPSAVSIGHPLTVQ 104
Query: 430 LCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKSPIPYTNHPR 606
L W A T +L T +I++GG + A + +L +NP IK YT+ P+
Sbjct: 105 LIWVPASSTTTSSQILGTYGGQQISVGGQVTNSSPAKVSANLLMMNPHIKDSTSYTDTPK 164
Query: 607 LNIH 618
L ++
Sbjct: 165 LLVY 168
>UniRef50_P03608 Cluster: Coat protein; n=21; Turnip yellow mosaic
virus|Rep: Coat protein - Turnip yellow mosaic virus
Length = 189
Score = 65.3 bits (152), Expect = 2e-09
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 1/159 (0%)
Frame = +1
Query: 250 PFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 429
PFQ GT+ S+T+ ++ +VS++ YR A L +L + P+ + P TV
Sbjct: 34 PFQSEVL-FAGTKDAEASLTIANIDSVSTLTTFYRHASLESLWVTIHPTLQAPTFPTTVG 92
Query: 430 LCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKSPIPYTNHPR 606
+CW A+ V + T IGG + + + C L +NP +K I Y + P+
Sbjct: 93 VCWVPANSPVTPAQITKTYGGQIFCIGGAINTLSPLIVKCPLEMMNPRVKDSIQYLDSPK 152
Query: 607 LNIHFHQSPEXXXXXXXXPGLKPPFVIRGSISVSHPLVT 723
L I P P + G++S+ PL+T
Sbjct: 153 LLISITAQP------TAPPASTCIITVSGTLSMHSPLIT 185
>UniRef50_P19128 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat
protein - Cacao yellow mosaic virus
Length = 188
Score = 64.9 bits (151), Expect = 2e-09
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 1/127 (0%)
Frame = +1
Query: 241 LIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 420
++ PFQ L G E ++ V++ + +++ YR A L +L+A++ P+ + P
Sbjct: 31 IVYPFQFTIASL-GVEPTADFVSIAAQAAITAYTSLYRHAILTDLQAIIHPNGYAPAFPT 89
Query: 421 TVDLCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKSPIPYTN 597
+V L W + T +L +GG + +PC L INPIIK + YT+
Sbjct: 90 SVALAWVPYNSTATAAKILDVFGGQEFCVGGSINSTSPIIVPCPLTNINPIIKDSVTYTD 149
Query: 598 HPRLNIH 618
P+L I+
Sbjct: 150 TPKLLIY 156
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 63.7 bits (148), Expect = 6e-09
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Frame = +1
Query: 247 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 426
+PFQ G K + + ++S + GYR A L++ E P A + P++V
Sbjct: 1908 VPFQWAVASYAGDSAKFLTDDLSGSSHLSRLTIGYRHAELISAELEFAPLAAAFAKPISV 1967
Query: 427 DLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQAT-LPCDLGYINPIIKSPIPYTNHP 603
WT A + L +T+GG LM T +P DL +NP+IK+ + +T+ P
Sbjct: 1968 TAVWTIASIAPATTTELQYYGGRLLTLGGPVLMGSVTRIPADLTRLNPVIKTAVGFTDCP 2027
Query: 604 R 606
R
Sbjct: 2028 R 2028
>UniRef50_O89519 Cluster: Virion protein; n=2; Tymovirus|Rep: Virion
protein - Dulcamara mottle virus
Length = 188
Score = 63.3 bits (147), Expect = 8e-09
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +1
Query: 304 VTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLAT 483
V++ + +++ + GYR A LV L + P+ ++ PVTVD+ W A+ T +L+
Sbjct: 52 VSLSASESLAKLTAGYRRAKLVELFLTITPTQLAIDNPVTVDVVWVPANSTATPSKILSV 111
Query: 484 PSSSRITIGGLALMHQA-TLPCDLGYINPIIKSPIPYTNHPRLNIH 618
R IGG Q +PC+L +N +IK YT+ P+L ++
Sbjct: 112 YGGQRFLIGGTLTTSQVIRVPCNLQSVNAMIKDSTIYTDSPKLLVY 157
>UniRef50_Q8QY74 Cluster: Coat protein; n=1; Passion fruit yellow
mosaic virus|Rep: Coat protein - Passion fruit yellow
mosaic virus
Length = 188
Score = 62.1 bits (144), Expect = 2e-08
Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Frame = +1
Query: 247 IPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 426
+PFQ L GT S+SV++ + VSS+ YR A L +L A + P+ S P TV
Sbjct: 37 LPFQTKLASL-GTAEVSDSVSIAANAAVSSLATPYRHARLTSLVATIHPNHLSPSNPTTV 95
Query: 427 DLCWTTADVTVEGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKSPIPYTNH- 600
L W + T ++L IGG + + ++PC+L +NP+IKS +H
Sbjct: 96 SLVWVPFNSTATSSDILNVFGGQSFCIGGAVNSLAAISVPCNLTNVNPVIKSSKLPPSHR 155
Query: 601 ------PRLNIHFHQSP 633
PRL H SP
Sbjct: 156 LFPNSTPRLPAHRSSSP 172
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 60.9 bits (141), Expect = 4e-08
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Frame = +1
Query: 241 LIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 420
L +PFQ D TG + + + ++++ YR A L+ +E V P PS P+
Sbjct: 1866 LDLPFQWKVTDFTGYAAYHGTDDLVASAVLTTLCAPYRHAELLYVEISVAPCPPSFSKPI 1925
Query: 421 TVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQAT-LPCDLGYINPIIKSPIPYTN 597
+ WT A ++ +IT+GG ++ T +P DL +NP IKS + Y +
Sbjct: 1926 MFTVVWTPATLSPRDGKETDYYGGRQITVGGPVMLSSTTAVPADLARMNPFIKSSVSYND 1985
Query: 598 HPR 606
PR
Sbjct: 1986 TPR 1988
>UniRef50_O89518 Cluster: Virion protein; n=1; Wild cucumber mosaic
virus|Rep: Virion protein - Wild cucumber mosaic virus
Length = 188
Score = 58.0 bits (134), Expect = 3e-07
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Frame = +1
Query: 280 GTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTV 459
G + S+ +++ S P + + +R A L++ +A++ P + +P+TVDL W +A+
Sbjct: 44 GPKEVSSQISLSSCPELLRLTSLFRHARLLSAKAIITPFDGVVSLPITVDLAWVSANSPA 103
Query: 460 EGVNVLATPSSSRITIGG-LALMHQATLPCDLGYINPIIKSPIPYTNHPRLNIHFHQSP 633
++L S T GG + LP + +N ++K + Y + P+L + F +P
Sbjct: 104 SPTDILKIYGGSSYTFGGAINSTRPIELPLPINSVNDMLKDSVSYLDTPKLLV-FSPAP 161
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 54.8 bits (126), Expect = 3e-06
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 1/124 (0%)
Frame = +1
Query: 241 LIIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 420
L IPFQ + + +++ + + + + + + +R + LE V+ P+ + PV
Sbjct: 1912 LTIPFQWVAL-IIKSDSAAFTADLAASTTLKKLTDPFRSCEITQLEVVLMPTLNAFNNPV 1970
Query: 421 TVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQ-ATLPCDLGYINPIIKSPIPYTN 597
T+ W + + L IT GG M+ AT+P DL INP IKS + Y +
Sbjct: 1971 TLHCVWRVNSIQPASGDELLYYGGQAITAGGPVSMNALATVPADLTRINPRIKSSVGYLD 2030
Query: 598 HPRL 609
PRL
Sbjct: 2031 TPRL 2034
>UniRef50_P15158 Cluster: Coat protein; n=9; Tymovirus|Rep: Coat
protein - Belladonna mottle virus (BMDV)
Length = 190
Score = 52.4 bits (120), Expect = 1e-05
Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 5/128 (3%)
Frame = +1
Query: 241 LIIPFQRLYFDLT--GTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 414
+++PFQ F+ T GT + V++Q+ ++ + YR A +V +A++ P+ ++
Sbjct: 32 IVLPFQ---FEATTFGTAETAAQVSLQTADPITKLTAPYRHAQIVECKAILTPTDLAVSN 88
Query: 415 PVTVDLCWTTADVTVEGVNVL---ATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPI 585
P+TV L W A+ +L S + G ++ +P +L +N ++K +
Sbjct: 89 PLTVYLAWVPANSPATPTQILKLRVYGGQSFVLGGAISAAKTIEVPLNLDSVNRMLKDSV 148
Query: 586 PYTNHPRL 609
YT+ P+L
Sbjct: 149 TYTDTPKL 156
>UniRef50_Q8V0G9 Cluster: Coat protein; n=1; Bermuda grass
etched-line virus|Rep: Coat protein - Bermuda grass
etched-line virus
Length = 195
Score = 51.6 bits (118), Expect = 2e-05
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Frame = +1
Query: 289 TKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGV 468
TK + + + ++ + YR A L++ E + P S P+ WT A ++
Sbjct: 52 TKHKTDDLSAFTTLAKLTVVYRHAELIHAEVELTPCPGSFSKPLMFLFVWTPASLSPATG 111
Query: 469 NVLATPSSSRITIGGLALMHQAT-LPCDLGYINPIIKSPIPYTNHPRLNI 615
+ +IT+GG ++ T +P DL +NP+IKS + Y + PR ++
Sbjct: 112 WETSYYGGRQITVGGPVMLSSTTVIPADLSRMNPVIKSSVSYNDCPRWSL 161
>UniRef50_UPI0000E47EB9 Cluster: PREDICTED: hypothetical protein,
partial; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: hypothetical protein, partial -
Strongylocentrotus purpuratus
Length = 314
Score = 36.7 bits (81), Expect = 0.75
Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +3
Query: 531 SHPPLRSRLHQPDHQIPDSIHQPPQT*HP-FPSI-P*T--PYXKEFAPGVKASVCHQRLH 698
+HPP +HQ P H P T HP PSI P T P AP S H +
Sbjct: 28 THPPTHPTIHQLSTHQPTHPHIHPPTHHPNHPSIHPPTIHPLTNPSAPPSIHSSIHPSTN 87
Query: 699 QRISPPRH 722
Q I PP H
Sbjct: 88 QSIQPPTH 95
>UniRef50_Q6CCA2 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 911
Score = 36.7 bits (81), Expect = 0.75
Identities = 23/89 (25%), Positives = 36/89 (40%)
Frame = +1
Query: 271 DLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTAD 450
DLT T T + + + A + A++ P+A +L +P DL T D
Sbjct: 515 DLTTTATDLTTTATDLTTTATDLTVPTVTALMETATALMVPTATALMVPTATDLTTTATD 574
Query: 451 VTVEGVNVLATPSSSRITIGGLALMHQAT 537
+T T + + +T ALM AT
Sbjct: 575 LTTTATATDLTTTVTDLTTTATALMETAT 603
Score = 33.9 bits (74), Expect = 5.3
Identities = 19/81 (23%), Positives = 39/81 (48%)
Frame = +1
Query: 295 SNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNV 474
+ + T ++P V+++++ + A++ P+A L +P DL T D+T +
Sbjct: 662 TTTATDLTVPTVTALMETATALMVPTATALMVPTATDLMVPTATDLTTTVTDLTTTATAL 721
Query: 475 LATPSSSRITIGGLALMHQAT 537
+ T ++ + ALM AT
Sbjct: 722 METATALTVPT-ATALMETAT 741
>UniRef50_UPI0000DB7F80 Cluster: PREDICTED: similar to SSXT protein
(Synovial sarcoma, translocated to X chromosome) (SYT
protein); n=1; Apis mellifera|Rep: PREDICTED: similar to
SSXT protein (Synovial sarcoma, translocated to X
chromosome) (SYT protein) - Apis mellifera
Length = 608
Score = 35.9 bits (79), Expect = 1.3
Identities = 21/46 (45%), Positives = 22/46 (47%)
Frame = +3
Query: 495 SHYYWRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP 632
S Y P+ SSHPP HQP HQ P HQPP H P P
Sbjct: 420 SGYPVHQTPHPSSHPP-----HQPPHQSP---HQPPHAPHQPPHQP 457
>UniRef50_Q5JJ70 Cluster: Hypothetical membrane protein, conserved;
n=1; Thermococcus kodakarensis KOD1|Rep: Hypothetical
membrane protein, conserved - Pyrococcus kodakaraensis
(Thermococcus kodakaraensis)
Length = 541
Score = 35.5 bits (78), Expect = 1.7
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +1
Query: 325 NVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRI 501
NVS +KG ++ Y V+ VV P SL + +D ++ + TVE +T S SR+
Sbjct: 180 NVSLSVKGVKELYSVSKSMVVAPGYSSLVFEIPIDSKYSEGEYTVELAVRCSTTSVSRL 238
>UniRef50_UPI0000F1EE24 Cluster: PREDICTED: similar to 2410089E03Rik
protein; n=1; Danio rerio|Rep: PREDICTED: similar to
2410089E03Rik protein - Danio rerio
Length = 739
Score = 34.7 bits (76), Expect = 3.0
Identities = 23/68 (33%), Positives = 29/68 (42%)
Frame = +3
Query: 519 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGVKASVCHQRLH 698
PYA PP S P H P S+H PP P P +P+ P + A H
Sbjct: 270 PYAQ--PPPSSHAPPPPHHAPPSLHAPPLHDPPTVHAPPSPHA---PPSLHAPPLHSP-P 323
Query: 699 QRISPPRH 722
R++PP H
Sbjct: 324 SRLAPPYH 331
>UniRef50_Q1HTT9 Cluster: A5L; n=1; Squirrelpox virus|Rep: A5L -
Squirrelpox virus
Length = 659
Score = 34.7 bits (76), Expect = 3.0
Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Frame = +1
Query: 244 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIK-GYRDAYLVNLEAVVFPSAPSLKIPV 420
++P RL+ + + T+ + T Q+ P V + K ++ L+ + +P +
Sbjct: 78 VLPHPRLFMNSSETDCYFSPRTCQTPPLVQILSKCAETNSALMRAICLHWPGNDKMTTVA 137
Query: 421 TVDLCWTTADVTVEGVNVLATPSSSRITIG--GLALMHQATLPCDLGYINPIIKSPIPYT 594
++ W +L P++ R+ +G G + CD+GY ++K P+ Y
Sbjct: 138 AINT-WMCRHGLARN-RLLRMPAARRLGLGNTGARTVIDDMTVCDIGYHAILVKDPVRY- 194
Query: 595 NHPRLNIHFH 624
+ P ++I+ H
Sbjct: 195 SRPEIDIYLH 204
>UniRef50_A6RXJ9 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 940
Score = 34.7 bits (76), Expect = 3.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 510 RSRPYASSHPPLRSRLHQPDHQIPDSIHQ 596
R P A+SHPP + H P HQ P HQ
Sbjct: 206 RQHPSATSHPPPTPQHHLPQHQTPSHSHQ 234
>UniRef50_Q9LUV4 Cluster: Hydroxyproline-rich glycoprotein; n=6;
core eudicotyledons|Rep: Hydroxyproline-rich
glycoprotein - Arabidopsis thaliana (Mouse-ear cress)
Length = 532
Score = 34.3 bits (75), Expect = 4.0
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +3
Query: 522 YASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPG 665
Y SS P +RS H P + P + PP T + S P PY E PG
Sbjct: 441 YVSSFPFIRSPSHSPQYASPAAYPSPPTTVYSNRSPP-YPYSPEIIPG 487
>UniRef50_Q55FJ0 Cluster: WD40 repeat-containing protein; n=1;
Dictyostelium discoideum AX4|Rep: WD40 repeat-containing
protein - Dictyostelium discoideum AX4
Length = 2179
Score = 33.9 bits (74), Expect = 5.3
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 530 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLNAV 643
K P PA S+ + SS+ T TTP TSIS+N LN++
Sbjct: 131 KAPPPAPSSPLSPSSSSSTSTTTTPLSTSISLNDLNSM 168
>UniRef50_A2QU02 Cluster: Similarity: similarities correspond to
multiple threonine and proline residues; n=2;
Aspergillus|Rep: Similarity: similarities correspond to
multiple threonine and proline residues - Aspergillus
niger
Length = 699
Score = 33.9 bits (74), Expect = 5.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 530 KPPSPAISATSTRSSNPRFHTPTTPDL 610
+ P P + TSTR+SNP HTP P L
Sbjct: 29 RKPHPPKATTSTRTSNPAAHTPNQPPL 55
>UniRef50_A4VPT0 Cluster: Integrase/recombinase XerC, putative; n=5;
Pseudomonas|Rep: Integrase/recombinase XerC, putative -
Pseudomonas stutzeri (strain A1501)
Length = 339
Score = 33.1 bits (72), Expect = 9.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 636 TPYXKEFAPGVKASVCHQRLHQRISPPRHW 725
T Y +E PG K++V + LHQR++ R W
Sbjct: 64 TLYIRELLPGAKSAVANSTLHQRLTAIRLW 93
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 790,479,072
Number of Sequences: 1657284
Number of extensions: 16262292
Number of successful extensions: 49042
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 45959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48918
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 76243001646
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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