Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C14
         (861 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)                    32   0.69 
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               29   3.7  
SB_27881| Best HMM Match : Keratin_B2 (HMM E-Value=0.5)                29   3.7  
SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)               29   4.9  
SB_30122| Best HMM Match : YadA (HMM E-Value=2)                        29   4.9  
SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   4.9  
SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)                   29   4.9  
SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)                   29   6.4  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.4  
SB_40784| Best HMM Match : TGF_beta (HMM E-Value=6.40393e-43)          28   8.5  
SB_20390| Best HMM Match : LRR_1 (HMM E-Value=0.34)                    28   8.5  

>SB_6924| Best HMM Match : TTL (HMM E-Value=4.4e-09)
          Length = 458

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 414 TSHS*PLLDYC*RHS*RSQCAGHPFILSHYYWRSRPY--ASSHPPLR 548
           T +   LL YC     R   AGHPF+L  Y +  R Y   +S  PLR
Sbjct: 91  TKYDIDLLGYCTEQEIRRVVAGHPFLLDGYKFDLRVYVLVTSCDPLR 137


>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
 Frame = +3

Query: 474 AGHPFILSHYYWRSRPYASSH------PPLRSRLHQPDHQIPDSIHQ 596
           + HP  + H+  +S P+ SSH      PP +  LH+PD+   +  HQ
Sbjct: 289 SAHPSQVPHH--KSEPHTSSHKPQLWVPPTQQSLHKPDNPHKNPYHQ 333


>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 456 CDVSSSPTKVNCDWYFEARGGRKNDSLKIDKIRVAVAFYDGGDVR**LHSDTVRFGFGAS 277
           C  +  P   +  W+F +  G K DS  +  +  +     G  V   +HS  VR G GA+
Sbjct: 275 CVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTGVQVSKPIHSTAVRCGSGAT 334

Query: 276 KIE 268
           + E
Sbjct: 335 EEE 337


>SB_27881| Best HMM Match : Keratin_B2 (HMM E-Value=0.5)
          Length = 168

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +3

Query: 462 RSQCAGHPFILSHYYWRSRPYASSHPPLRSRLHQP---DHQIPDSIHQPPQT*HPFPSIP 632
           +S C  HP     Y    +P   SHP    R +QP   +H I   ++QP    HP  +IP
Sbjct: 31  QSSCINHPVSTILY----QPSCISHPVSTIR-YQPSRINHPISTILYQPSHINHPVSTIP 85

Query: 633 *TP 641
             P
Sbjct: 86  YQP 88


>SB_59599| Best HMM Match : rve (HMM E-Value=1.69557e-43)
          Length = 1803

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
 Frame = -1

Query: 591  VWNRGFDDRVDVAEIAGEG----GLMHKGE-TANSNARG*RGGQHIDSFNCD---VSSSP 436
            +W++     +DVAE+AG G    GL  +   TA S   G     HID F C    +S  P
Sbjct: 1545 LWHKDTAGHIDVAEVAGGGATNEGLKKRAAYTAQSVEVGLIVNLHIDIFKCGRYLLSGVP 1604

Query: 435  TKVNCD 418
             K+  +
Sbjct: 1605 MKIRLE 1610


>SB_30122| Best HMM Match : YadA (HMM E-Value=2)
          Length = 408

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 394 SAPSLKIPVTVDLCWTTADVTVEGVNVLATPSSSRIT 504
           S P  K+P+T     T+A+VT    +++ +PS + +T
Sbjct: 239 SRPETKVPITTIGASTSAEVTTSQRDLMPSPSQAHVT 275


>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
 Frame = +1

Query: 268 FDLTGTETKSNSVTVQS---LPNVSSIIKGYRDAYLVNL 375
           F +TG E KS+S+T++    +P V ++ +G  D +LV+L
Sbjct: 485 FTITGQEGKSDSITIRHADVIPRV-ALARGNEDVFLVHL 522


>SB_30304| Best HMM Match : fn3 (HMM E-Value=1.5e-32)
          Length = 808

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 5/112 (4%)
 Frame = +1

Query: 292 KSNSVTVQSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEG 465
           +++ VT Q  P+ S   +  GY D    N+     PS  S  I V  ++ W     T   
Sbjct: 207 EAHIVTEQEAPSCSPEDLAVGYSDGKAHNITWSPIPSNQSNGIIVVYEITWVKVANTTRS 266

Query: 466 VNVLATPSSSRITIGGLALMHQATLPCDLGYINP---IIKSPIPYTNHPRLN 612
              L   SS+  +     L     LPC +  I+     I  P P+T    LN
Sbjct: 267 RRALDAASSANTSSTSYRLTD--LLPCSVYNISVRGYTIAGPGPFTRPLSLN 316


>SB_48885| Best HMM Match : DUF741 (HMM E-Value=0.88)
          Length = 841

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 460 EGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPYTNHPRLNIH 618
           E V  + +PS+S +TI G +L   +  P   G  +P + S  P  N P   IH
Sbjct: 560 EVVTTIGSPSTSGVTITGTSLRGDSQAPAVSGSQSPPLTSSTPPMN-PSNPIH 611


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 536 PSPAISATSTRSSNPRFHTPTTPDLTS 616
           P+PA + T T+ + P  HTPTTP  T+
Sbjct: 94  PTPATTPTPTKPT-PTAHTPTTPTPTA 119


>SB_40784| Best HMM Match : TGF_beta (HMM E-Value=6.40393e-43)
          Length = 1402

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = +2

Query: 530 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRARG*SLRLSSEAPSAYL 709
           +PP P  S ++   S P   TP +  L     N L ++L  VR    + +  S+ PSA  
Sbjct: 579 QPPVPVKSLSTMLQSTPAQVTPQS--LIPEDHNELKSLLQDVRNMISAFQTQSQQPSASS 636

Query: 710 TPSS 721
            PSS
Sbjct: 637 LPSS 640


>SB_20390| Best HMM Match : LRR_1 (HMM E-Value=0.34)
          Length = 108

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/72 (27%), Positives = 38/72 (52%)
 Frame = +1

Query: 412 IPVTVDLCWTTADVTVEGVNVLATPSSSRITIGGLALMHQATLPCDLGYINPIIKSPIPY 591
           +P  + LC +   +++E   + A PS  +I  GG +L+ Q       G++  +  S +PY
Sbjct: 18  LPYELVLCGSLQIMSIENCPLSALPS--QIVAGGPSLVIQ-------GFVFHVSCSWLPY 68

Query: 592 TNHPRLNIHFHQ 627
           ++ PR  I+F +
Sbjct: 69  SSEPRHAINFRE 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,293,850
Number of Sequences: 59808
Number of extensions: 507629
Number of successful extensions: 1577
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)