Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP01_FL5_C14
(861 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family... 34 0.11
At1g62970.1 68414.m07110 DNAJ heat shock N-terminal domain-conta... 32 0.56
At5g09730.1 68418.m01127 glycosyl hydrolase family 3 protein bet... 30 2.3
At1g50090.1 68414.m05619 aminotransferase class IV family protei... 28 7.0
At5g59170.1 68418.m07416 proline-rich family protein contains pr... 28 9.2
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH... 28 9.2
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 9.2
>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
protein identical to hydroxyproline-rich glycoprotein
[Arabidopsis thaliana] gi|9293881|dbj|BAB01784
Length = 532
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/48 (39%), Positives = 23/48 (47%)
Frame = +3
Query: 522 YASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPG 665
Y SS P +RS H P + P + PP T + S P PY E PG
Sbjct: 441 YVSSFPFIRSPSHSPQYASPAAYPSPPTTVYSNRSPP-YPYSPEIIPG 487
>At1g62970.1 68414.m07110 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226: DnaJ domain
Length = 797
Score = 31.9 bits (69), Expect = 0.56
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 483 PFILSHYYWRSRPYASSHPPLRSR---LHQPDHQIPDSIHQPPQT*HPFP 623
PF +S +RP+ +S PP S+ + QP + QPP T P P
Sbjct: 488 PFSMSQPSSTARPFPASQPPAASKSFPISQPPTTSKPFVSQPPNTSKPMP 537
Score = 27.9 bits (59), Expect = 9.2
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Frame = +3
Query: 468 QCAGHPFILSHYYWRSRPYASSHPPLRSRLHQPDHQIPDS-----IHQPPQT*HPFPSIP 632
Q A +PF +S S+P++ S P +R P Q P + I QPP T PF S P
Sbjct: 471 QPASNPFPVSQPRPNSQPFSMSQPSSTARPF-PASQPPAASKSFPISQPPTTSKPFVSQP 529
>At5g09730.1 68418.m01127 glycosyl hydrolase family 3 protein
beta-xylosidase, Hypocrea jecorina, EMBL:Z69257
Length = 773
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +2
Query: 548 ISATSTRSSNPRFHTPTTPDLTSISINPLNAVLXGVRARG*SL--RLSSEAPSAYLTPSS 721
IS S S+P F T + + + NA L ++AR L RL+ E +LT +
Sbjct: 22 ISEQSNNQSSPVFACDVTGNPSLAGLRFCNAGL-SIKARVTDLVGRLTLEEKIGFLTSKA 80
Query: 722 LGMAKXGSPPY 754
+G+++ G P Y
Sbjct: 81 IGVSRLGIPSY 91
>At1g50090.1 68414.m05619 aminotransferase class IV family protein
contains Pfam profile: PF01063 aminotransferase class IV
Length = 367
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +1
Query: 310 VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVEGVNVLATPS 489
V+S N S ++K +A V+F A + K V C ++ + N+++TP
Sbjct: 201 VKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEEVSTC----NIFILKGNIVSTPP 256
Query: 490 SSRITIGGLALMHQATLPCDLGY 558
+S + G+ L D+GY
Sbjct: 257 TSGTILPGITRKSICELARDIGY 279
>At5g59170.1 68418.m07416 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 288
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +3
Query: 507 WRSRPYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGVK 671
++ P +PP + P+H P PPQ +P P I P +++ P +K
Sbjct: 137 FKKYPPPEQYPPPIKKYPPPEHYPPPIKKYPPQEQYP-PPIKKYPPPEKYPPPIK 190
>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
(MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
thaliana}
Length = 1324
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +1
Query: 313 QSLPNVSSIIKGYRDAY 363
QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 519 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFP 623
P S PP+ S P H P +H PP H P
Sbjct: 673 PVYSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPP 707
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 519 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*H-PFPSIP*TPYXKEFAPGVKASV 680
P S PP+ S P H P +H PP H P P + P F+P A +
Sbjct: 695 PVHSPPPPVHSP-PPPVHSPPPPVHSPPPPVHSPPPPVQSPPPPPVFSPPPPAPI 748
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 519 PYASSHPPLRSRLHQPDHQIPDSIHQPPQT*HPFP 623
P S PP+ S P H P +H PP H P
Sbjct: 755 PVHSPPPPVHSPPPPPVHSPPPPVHSPPPPVHSPP 789
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,153,565
Number of Sequences: 28952
Number of extensions: 365275
Number of successful extensions: 1171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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