Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C12
         (916 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    27   3.7  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   6.5  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   6.5  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    26   8.6  

>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -2

Query: 222 SMNYEGKSKYNSLFVQCTKLYYMY*KTELGHLTNCPSTDRSVQC 91
           S + +G+S  ++ F +  KL+     TELG   NC ++DR   C
Sbjct: 317 SFSQDGRSFLSTSFDKTIKLW----DTELGKCLNCFNSDRLTNC 356


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 101 PFSVRARTSLMQLPTPTWYTD 39
           P    A T L+ +PTP+W T+
Sbjct: 702 PIGTTAGTVLVDIPTPSWVTE 722



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 101  PFSVRARTSLMQLPTPTWYTD 39
            P    A T L+ +PTP+W T+
Sbjct: 954  PIGTTAGTVLVDIPTPSWVTE 974



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 101 PFSVRARTSLMQLPTPTWYTD 39
           P    A T L+ +PTP+W T+
Sbjct: 810 PVGTTAGTVLVDIPTPSWVTE 830



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 101 PFSVRARTSLMQLPTPTWYTD 39
           P    A T L+ +PTP+W T+
Sbjct: 918 PVGTTAGTVLVDIPTPSWVTE 938



 Score = 25.8 bits (54), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 101  PFSVRARTSLMQLPTPTWYTD 39
            P    A T L+ +PTP+W T+
Sbjct: 990  PVGTTAGTVLVDIPTPSWVTE 1010


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -2

Query: 135 GHLTNCPSTDRSVQCPSKNKPNAATHP 55
           GH  N P T+ S   PS N  NAA HP
Sbjct: 244 GH--NSPHTNYSASTPSFNHFNAAGHP 268


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 101 PFSVRARTSLMQLPTPTWYTD 39
           P    A T L+ +PTP+W T+
Sbjct: 745 PIGTTAGTVLVDIPTPSWVTE 765


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -2

Query: 288 VGKKDGSAHLPPP*RMTVLNLQSMNYEGKSKYNSLFVQCTKLY 160
           + KK    H     R  VL LQS+N+    K+ S F   TK+Y
Sbjct: 61  INKKKHDEHKIKKLRNEVLLLQSLNHPLLCKFYSEFEDETKIY 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,258
Number of Sequences: 5004
Number of extensions: 36361
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)