Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C12
         (916 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0227 - 23449579-23450459,23450574-23450691                       31   1.7  
11_04_0329 - 16442298-16443734                                         30   2.9  
08_01_0434 + 3809681-3810016,3810039-3811100                           30   2.9  

>05_05_0227 - 23449579-23450459,23450574-23450691
          Length = 332

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +2

Query: 251 GGGRCAXPSFFPTSEDAAPVLGXCTLGVVRQYGPCTGLPCCPPAPXPRK 397
           GGGR + P+    ++   PVLG     +    G C+ L   PP P PR+
Sbjct: 235 GGGRPSAPARREGTDPCRPVLGGAPFVIC---GKCSELLRTPPPPRPRR 280


>11_04_0329 - 16442298-16443734
          Length = 478

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 248 HGGGRCAXPSFFPTSEDAAPVLGXCTLGVVRQYGPCTG 361
           HG G  A  +F     D  P  G   +GV+  YG CTG
Sbjct: 308 HGHGEVALATFHRMRRDGVPPNGATLVGVLSAYG-CTG 344


>08_01_0434 + 3809681-3810016,3810039-3811100
          Length = 465

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +2

Query: 296 DAAPVLGXCTLGVVRQYGPCTGLPCCPPAPXPRKNAGXAA 415
           D AP          R+ GPC  LPC  PA  P  + G  A
Sbjct: 26  DVAPSTSRREGAAKRKKGPCRRLPCSLPALPPASSGGGEA 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,360,699
Number of Sequences: 37544
Number of extensions: 335507
Number of successful extensions: 847
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)